Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00188 ATGGAATCTGGGCGAAAGACTGAGGCCGGTGAATCAAATACACATCCTAGCAAAAGTTTAAGCTCCACCTTATCCTCGGCATCTAATTCCTCCTCCGACAGCTCCTTTGAATTGATTGTAAATGAGCCCGGCCTATACGTTGGTGGTACGACGAGTGACTCTTTGAAAAAAAAAGAGTTGCATGTTGCAGGACACCCGGATTCTGATTTTGCGTTTATCAATGGCAATGGATCTCCCCTTCGTGATGGTGTGATTGAATTCCCAAAGCCTGCAAAGGACAAAGATATCAAGGTTGTGGTGAAGAACAGCAGGTCAGGCAGCGAGGAAACAACTCAATATCCTCAAACTCAAGTGATGGAGCGAGCTGATAATCCTAATTCACCTGGATATAGAATCCCATCTCATGTCTTTTCTAGAACTAAATCTACAACGCCTACAGAATGGAGTGGTGCTTCAAATGAATCATTGTTCAGTATTCAGATGGGAACCATGAGTTTTACCAGAGAACAATTGTGTTGGATAGGAAAATCAGGCGAGCTATATAGGTCTGGTGAATTAGCCATGAGCGTATCCCAGGTTTTGAATATGAAACATTCTGAATGTGGGTTGAAGGGCACCCATCCAGATGGTGATATGGCAGCCACTGAAGCACGATGTGCACAAACAATGAGGGAGGTTATAAGGGAAAATTCAGAAACCAACCGCATGGGAAGTTCTACTCTAACAGAGTCGTCATCTCAGTCAGCCAGCGTTTCTCATCAGTCAGAAAGCAGCACACAATCTTTCCAGTTTCCCATATTGTCAGGAGATGGAGCAAAAAGCATTTCTTTTAAGGGAGCAGAACCCGAGAAGGAGAAGGCGAATAACGAGACAAATAATGAATTGCAACATTCAGCTTCATCAAATCCACAGATCCCCAAAGAATCGAGCTCAGACGAATCTCCAAAAGCAGATTCAAATGTGGCTCCTCCAAAGAGATGGCTTTCTTGCTTATCTTGCTGCTCATTCCGTAGTTGA 1017 43.85 MESGRKTEAGESNTHPSKSLSSTLSSASNSSSDSSFELIVNEPGLYVGGTTSDSLKKKELHVAGHPDSDFAFINGNGSPLRDGVIEFPKPAKDKDIKVVVKNSRSGSEETTQYPQTQVMERADNPNSPGYRIPSHVFSRTKSTTPTEWSGASNESLFSIQMGTMSFTREQLCWIGKSGELYRSGELAMSVSQVLNMKHSECGLKGTHPDGDMAATEARCAQTMREVIRENSETNRMGSSTLTESSSQSASVSHQSESSTQSFQFPILSGDGAKSISFKGAEPEKEKANNETNNELQHSASSNPQIPKESSSDESPKADSNVAPPKRWLSCLSCCSFRS 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1078006 1079293 + Carg09201-RA Car11g00188 156141

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00188 338 MobiDBLite consensus disorder prediction 131 150 - -
Car11g00188 338 MobiDBLite consensus disorder prediction 1 35 - -
Car11g00188 338 MobiDBLite consensus disorder prediction 229 324 - -
Car11g00188 338 MobiDBLite consensus disorder prediction 292 310 - -
Car11g00188 338 MobiDBLite consensus disorder prediction 232 267 - -
Car11g00188 338 MobiDBLite consensus disorder prediction 120 150 - -
Car11g00188 338 MobiDBLite consensus disorder prediction 277 291 - -
Car11g00188 338 MobiDBLite consensus disorder prediction 13 35 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00188 - - - cmos:111440990 614.379
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00188 Car-Chr11:1078006 Car15g00233 Car-Chr15:1314906 6.05E-14 dispersed
Car10g00280 Car-Chr10:1346380 Car11g00188 Car-Chr11:1078006 1.27E-88 wgd
Car11g00188 Car-Chr11:1078006 Car18g01018 Car-Chr18:10595275 2.15E-12 wgd
Car11g00188 Car-Chr11:1078006 Car04g01738 Car-Chr4:9953307 2.80E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g666 Blo04g00791 Blo16g00165 . . . Bpe13g00315 Bma06g00149 . . . . . . Car11g00188 Sed08g0276 . . Bhi02g00094 Tan09g2043 Cmetu02g1345 . Hepe09g0274 . . Cla06g01538 Cam06g1697 Cec06g1759 Cco06g1758 Clacu06g1664 Cmu06g1610 Cre06g2423 . . . . . . . . . . Bda11g01731 Bda14g00882 . Bpe15g00579 Bma03g00852 . . . . . . . . . Cpe18g00708 . . . . . . . . . . . . . . Lsi06g01411 Csa01g00296 Chy02g02441 Cme02g01828
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006345 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 1 1 3 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g00188 Car_Chr11 FPKM 9.543956 8.058189 13.211613 12.895164 11.172672 9.67137 12.192852 7.743139 8.693326 8.252528