Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00189 ATGGCGAATGCACCTACCCCAGGCGGGATTTCCAAGATCTTGGCGAATCCATCACCGGATTCCGCCTCCGATGTCCCCCAGGTTGTGCTTCAGGTCCTCGATCTCAAGGCGACGGGAAATCGCTACATGTTTACTGCTGCCGATGGGGATATGAAGCTAAAATCCATTCTTCCTTCAAACCTTACGTCAGAGGTCATATCTGGAAACATTCAAAATCTGGGTCTTATTCGCGTTCTTGATTATTCTCTCAATGACATTCCGAACAAGCCAGAAAAGTATCTAATCGTGACAAAATGCGAGGTGGTGTCTTCTGCTCTAGAGAAGGAGGTAAAATTTGAGGTTAAGAAAGAGGAAGCAGATATTGTTTTGAAACCCAAGCAAGAGTTAGACGATAAGAGTGCGGTTAATACTGGATCTGGCATTCTTTTAAAACCAAAGCAAGAATTGGTTGCCAAATCAGCTGCCCAGATTGTACATGAGCAGAGTACAAATATGGCACCATCTGCACGGATGTCCATGACAAGGCGGGTTCATCCGCTTGTCTACTTAAATCCGTACCAGGGAGATTGGACTATCAAAGTTCGTGTTACAGACAAGGGAAATCTGCGTACATACAAGAATGCTCAGGGAGAAGGTTGTGTTTTCAATGTGGTGTTGACAGATGAAGATGGGACACAAATACAAGCAACGATGTTCAATGAAGCTGCAAGAAAGTTCTATGAAAAGTTTTCCCTTGGCAAAGTTTACTACGTTTCCAGGGGAACTTTGAAAGTTGCAAATAAAAAATTTAAGACAGTTCAAAATGATTATGAAATGACATTAAATGTGAATTCTCAAGTAGACGAGGTCACCAACGAAGCTGCTTTCGTCCCTGAAACCAAGTTCAATTTTGTCAAGATTGATATGTTAGGTCCTCACGTGAATGGAAGAGATCTTGTTGATGTTATTGGAGTTGTACAGAGTGTTTCTCCTACCATGAGCATTAGAAGGAAAATCAACAATGAGACAGCTCCAAAACGTGATGTAACTATTGCTGATGAGACAAAGAAGACTGTTGTGGTATCTTTGTGGAATGATCTTGCTACCACCGTGGGGCAGGAGTTGCTTGACATTGCCGATCAATCTCCCATAATTGCATTGAAGTATCTTAGAGTCGGAGATTTTCAAGGTGTATCTTTGTCAACTATAAGTAGGAGCTCAATTTTAATAAATCCAGACATAAAGGAAGCACATCAATTGAGATCATGGTACGACTCTGAAGGAAAAGCCATATCCATGGCTTCTGTCAGCTCTGGCATGAGCCCCTCATCCAAGAGTGGGTCGAGATCCATGTACACTGACCGGGTCTCCTTGTCTCATATACTCCAAAACAAATCTTTGGGAGAAGAAAAGCCAATGTTCTTCAGCATAAGAGCATATGTCAGCTTTATTAAGCCTGATCAAACAATGTGGTATCGGGCTTGTAAGACATGCAACAAGAAGGTGACCGATGCCATTGGATCTGGATATTGGTGCGAAAGCTGCCAGAAAAACGACGAAGAATGCAGCTTAAGGTACATAATGGTCGTAAGAGTTTCTGATGCCAGTTGTGAGGCTTGGCTCTCCACATTCAATGCGGAAGCGGAGAGGATTGTTGGGTGCACTGCCGAAGAGCTTGACGGGCTCAAATCACAGATTGGAGAGGAGGCTTCATATCAGCTGAAACTCAAAGAAGCAACTTGGGTTCCACATTTATTTCGAGTTAGCGTCTCTCAGAATGAGTACAACAATGAGAAGAGGCAAAGGATCACTGTCAGGTCCGTTGCTCCAGTTGACTTCGCTGCTGAGTCCAGATTTTTGCTTGAAGAAATAGCAAAGATGAAAGCTTCGTAG 1872 43.16 MANAPTPGGISKILANPSPDSASDVPQVVLQVLDLKATGNRYMFTAADGDMKLKSILPSNLTSEVISGNIQNLGLIRVLDYSLNDIPNKPEKYLIVTKCEVVSSALEKEVKFEVKKEEADIVLKPKQELDDKSAVNTGSGILLKPKQELVAKSAAQIVHEQSTNMAPSARMSMTRRVHPLVYLNPYQGDWTIKVRVTDKGNLRTYKNAQGEGCVFNVVLTDEDGTQIQATMFNEAARKFYEKFSLGKVYYVSRGTLKVANKKFKTVQNDYEMTLNVNSQVDEVTNEAAFVPETKFNFVKIDMLGPHVNGRDLVDVIGVVQSVSPTMSIRRKINNETAPKRDVTIADETKKTVVVSLWNDLATTVGQELLDIADQSPIIALKYLRVGDFQGVSLSTISRSSILINPDIKEAHQLRSWYDSEGKAISMASVSSGMSPSSKSGSRSMYTDRVSLSHILQNKSLGEEKPMFFSIRAYVSFIKPDQTMWYRACKTCNKKVTDAIGSGYWCESCQKNDEECSLRYIMVVRVSDASCEAWLSTFNAEAERIVGCTAEELDGLKSQIGEEASYQLKLKEATWVPHLFRVSVSQNEYNNEKRQRITVRSVAPVDFAAESRFLLEEIAKMKAS 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1080955 1084241 + Carg09200-RA Car11g00189 156142

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00189 623 Pfam Replication factor-A C terminal domain 467 613 IPR013955 -
Car11g00189 623 MobiDBLite consensus disorder prediction 1 22 - -
Car11g00189 623 Pfam Replication factor-A protein 1, N-terminal domain 6 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Car11g00189 623 Pfam OB-fold nucleic acid binding domain 190 275 IPR004365 GO:0003676
Car11g00189 623 Pfam Replication protein A OB domain 308 404 IPR031657 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00189 K07466 RFA1, RPA1, rpa; replication factor A1 - csv:101208545 1089.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00189 Car-Chr11:1080955 Car16g01142 Car-Chr16:9754883 3.65E-87 dispersed
Car11g00189 Car-Chr11:1080955 Car06g00537 Car-Chr6:3018858 1.80E-88 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g667 . . Bda06g00521 . Bpe12g00524 . . Bma12g00964 . . . . . Car11g00189 Sed08g0277 . Cpe04g01458 Bhi02g00093 Tan09g2042 Cmetu02g0517 . Hepe09g0275 . . Cla06g01537 Cam06g1696 Cec06g1758 Cco06g1757 Clacu06g1663 Cmu06g1609 Cre06g2422 . . . . . . . . . Blo15g00339 . . Bpe07g00755 . . Bma08g00242 . . Cmo11g00212 . . . . . . . . . . . . . . . . . . . . Lsi06g01410 Csa01g00297 Chy02g02440 Cme02g01827
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car09g01162 . 106 749 Core DNA Replication Machinery Family AT4G14700 65.7 1.2e-243 840.1
Car09g01162 . 73 749 Core DNA Replication Machinery Family AT4G12620 66.2 2.3e-255 879.0
Car12g00497 . 2 361 Core DNA Replication Machinery Family AT2G37560 67.2 2.5e-142 502.3
Car04g01018 . 9 309 Core DNA Replication Machinery Family AT2G01120 65.3 8.1e-111 397.9
Car17g00403 . 3 535 Core DNA Replication Machinery Family AT4G29910 57.8 1.4e-174 610.1
Car05g00780 . 1 234 Core DNA Replication Machinery Family AT1G26840 71.4 4.4e-89 325.1
Car06g01442 . 1035 1836 Core DNA Replication Machinery Family AT1G79150 59.8 1.0e-242 837.0
Car06g01490 . 1 855 Core DNA Replication Machinery Family AT1G44900 76.8 0.0e+00 1244.6
Car14g00959 . 9 852 Core DNA Replication Machinery Family AT1G44900 76.9 0.0e+00 1235.3
Car07g00105 . 1 252 Core DNA Replication Machinery Family AT5G46280 76.7 2.6e-112 403.3
Car11g00916 . 39 656 Core DNA Replication Machinery Family AT2G16440 73.9 2.1e-243 839.3
Car19g00528 . 78 319 Core DNA Replication Machinery Family AT2G16440 64.2 2.0e-100 364.4
Car11g00917 . 27 256 Core DNA Replication Machinery Family AT2G16440 75.9 3.0e-93 340.5
Car12g01142 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.5 0.0e+00 1115.9
Car07g00005 . 7 838 Core DNA Replication Machinery Family AT5G44635 72.8 0.0e+00 1196.0
Car19g00528 . 79 271 Core DNA Replication Machinery Family AT5G44635 51.8 1.4e-45 182.2
Car17g00984 . 8 719 Core DNA Replication Machinery Family AT4G02060 85.7 0.0e+00 1220.3
Car08g00380 . 35 746 Core DNA Replication Machinery Family AT4G02060 85.5 0.0e+00 1214.9
Car19g00528 . 78 276 Core DNA Replication Machinery Family AT4G02060 50.7 1.9e-43 174.9
Car20g00308 . 30 525 Core DNA Replication Machinery Family AT2G29680 60.1 8.3e-163 570.9
Car20g00308 . 30 486 Core DNA Replication Machinery Family AT1G07270 58.2 5.2e-143 505.0
Car08g00201 . 219 811 Core DNA Replication Machinery Family AT3G25100 77.4 8.3e-263 903.3
Car17g01184 . 1 593 Core DNA Replication Machinery Family AT3G25100 76.5 3.1e-257 884.8
Car06g00301 . 26 792 Core DNA Replication Machinery Family AT3G09660 74.3 0.0e+00 1108.2
Car19g00342 . 16 645 Core DNA Replication Machinery Family AT2G14050 78.2 1.2e-288 989.2
Car20g00654 . 1 405 Core DNA Replication Machinery Family AT2G20980 54.5 1.7e-115 413.3
Car09g00680 . 7 968 Core DNA Replication Machinery Family AT1G77320 50.4 3.2e-259 892.1
Car08g00561 . 1 192 Core DNA Replication Machinery Family AT1G80190 66.5 4.6e-72 268.1
Car07g01151 . 1 145 Core DNA Replication Machinery Family AT3G12530 73.1 1.2e-61 233.0
Car04g02792 . 1 192 Core DNA Replication Machinery Family AT1G19080 61.5 3.3e-61 231.9
Car04g02792 . 1 192 Core DNA Replication Machinery Family AT3G55490 61.5 3.3e-61 231.9
Car14g01856 . 15 164 Core DNA Replication Machinery Family AT5G49010 66.7 5.0e-52 201.4
Car02g00355 . 1 768 Core DNA Replication Machinery Family AT5G67100 53.3 1.8e-200 697.6
Car18g00664 . 2 625 Core DNA Replication Machinery Family AT1G67630 62.8 1.3e-221 766.5
Car08g00153 . 1 447 Core DNA Replication Machinery Family AT1G67320 65.7 2.0e-185 646.0
Car09g01105 . 1 483 Core DNA Replication Machinery Family AT5G41880 60.0 3.0e-172 602.1
Car07g00805 . 47 1188 Core DNA Replication Machinery Family AT5G63960 78.4 0.0e+00 1790.8
Car14g00385 . 1 447 Core DNA Replication Machinery Family AT2G42120 74.9 1.7e-204 709.1
Car08g00153 . 1 447 Core DNA Replication Machinery Family AT1G67320 65.7 2.0e-185 646.0
Car02g01122 . 1 2094 Core DNA Replication Machinery Family AT1G08260 70.5 0.0e+00 2951.4
Car02g01122 . 9 2200 Core DNA Replication Machinery Family AT2G27120 67.3 0.0e+00 2917.9
Car01g00689 . 7 479 Core DNA Replication Machinery Family AT5G22110 69.6 1.7e-192 669.5
Car02g01084 . 1 439 Core DNA Replication Machinery Family AT5G22010 75.2 2.5e-181 633.3
Car02g01085 . 139 439 Core DNA Replication Machinery Family AT5G22010 65.9 2.9e-105 380.6
Car20g00116 . 317 497 Core DNA Replication Machinery Family AT5G22010 53.8 3.0e-46 184.5
Car16g00970 . 3 346 Core DNA Replication Machinery Family AT1G63160 86.3 2.5e-168 588.6
Car03g00180 . 1 320 Core DNA Replication Machinery Family AT5G27740 82.2 6.2e-157 550.8
Car04g01141 . 1 157 Core DNA Replication Machinery Family AT1G21690 87.3 8.1e-74 274.6
Car04g01140 . 36 220 Core DNA Replication Machinery Family AT1G21690 73.2 1.7e-71 266.9
Car15g00613 CST 1 363 Core DNA Replication Machinery Family AT1G77470 76.1 2.3e-154 542.3
Car04g02301 CST 1 362 Core DNA Replication Machinery Family AT1G77470 74.8 1.8e-151 532.7
Car05g01325 . 26 618 Core DNA Replication Machinery Family AT2G06510 69.0 3.1e-252 868.2
Car06g00537 CST 30 697 Core DNA Replication Machinery Family AT2G06510 52.1 1.1e-201 700.3
Car16g01142 CST 34 686 Core DNA Replication Machinery Family AT2G06510 52.2 4.6e-200 694.9
Car11g00189 . 1 623 Core DNA Replication Machinery Family AT5G08020 67.5 3.3e-243 838.2
Car06g00537 CST 6 804 Core DNA Replication Machinery Family AT5G45400 51.6 2.0e-230 796.2
Car16g01142 CST 10 785 Core DNA Replication Machinery Family AT5G45400 51.4 2.9e-224 775.8
Car11g00189 . 1 618 Core DNA Replication Machinery Family AT5G61000 65.3 5.3e-236 814.3
Car06g00537 CST 1 818 Core DNA Replication Machinery Family AT4G19130 53.3 6.5e-231 797.7
Car16g01142 CST 5 772 Core DNA Replication Machinery Family AT4G19130 54.8 1.1e-227 786.9
Car11g01012 . 1 359 Core DNA Replication Machinery Family AT5G26680 82.3 2.5e-173 605.5
Car14g01308 . 1 291 Core DNA Replication Machinery Family AT2G25100 63.6 9.3e-108 387.1
Car14g01310 . 1 198 Core DNA Replication Machinery Family AT2G25100 53.4 1.6e-62 236.9
Car20g00461 . 44 808 Core DNA Replication Machinery Family AT1G08130 67.8 9.5e-291 996.5
Car20g00461 . 204 808 Core DNA Replication Machinery Family AT1G49250 67.8 8.6e-237 817.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007473 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g00189 Car_Chr11 FPKM 1.069661 1.494097 1.243666 1.232897 1.225788 1.19721 1.163417 1.210897 1.371074 1.209766
Car11g00189 Car_Chr11 FPKM 1.120277 1.465815 0.860671 1.165037 1.028426 1.191561 1.156111 0.989821 0.995904 1.021207