Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00189 ATGGCGAATGCACCTACCCCAGGCGGGATTTCCAAGATCTTGGCGAATCCATCACCGGATTCCGCCTCCGATGTCCCCCAGGTTGTGCTTCAGGTCCTCGATCTCAAGGCGACGGGAAATCGCTACATGTTTACTGCTGCCGATGGGGATATGAAGCTAAAATCCATTCTTCCTTCAAACCTTACGTCAGAGGTCATATCTGGAAACATTCAAAATCTGGGTCTTATTCGCGTTCTTGATTATTCTCTCAATGACATTCCGAACAAGCCAGAAAAGTATCTAATCGTGACAAAATGCGAGGTGGTGTCTTCTGCTCTAGAGAAGGAGGTAAAATTTGAGGTTAAGAAAGAGGAAGCAGATATTGTTTTGAAACCCAAGCAAGAGTTAGACGATAAGAGTGCGGTTAATACTGGATCTGGCATTCTTTTAAAACCAAAGCAAGAATTGGTTGCCAAATCAGCTGCCCAGATTGTACATGAGCAGAGTACAAATATGGCACCATCTGCACGGATGTCCATGACAAGGCGGGTTCATCCGCTTGTCTACTTAAATCCGTACCAGGGAGATTGGACTATCAAAGTTCGTGTTACAGACAAGGGAAATCTGCGTACATACAAGAATGCTCAGGGAGAAGGTTGTGTTTTCAATGTGGTGTTGACAGATGAAGATGGGACACAAATACAAGCAACGATGTTCAATGAAGCTGCAAGAAAGTTCTATGAAAAGTTTTCCCTTGGCAAAGTTTACTACGTTTCCAGGGGAACTTTGAAAGTTGCAAATAAAAAATTTAAGACAGTTCAAAATGATTATGAAATGACATTAAATGTGAATTCTCAAGTAGACGAGGTCACCAACGAAGCTGCTTTCGTCCCTGAAACCAAGTTCAATTTTGTCAAGATTGATATGTTAGGTCCTCACGTGAATGGAAGAGATCTTGTTGATGTTATTGGAGTTGTACAGAGTGTTTCTCCTACCATGAGCATTAGAAGGAAAATCAACAATGAGACAGCTCCAAAACGTGATGTAACTATTGCTGATGAGACAAAGAAGACTGTTGTGGTATCTTTGTGGAATGATCTTGCTACCACCGTGGGGCAGGAGTTGCTTGACATTGCCGATCAATCTCCCATAATTGCATTGAAGTATCTTAGAGTCGGAGATTTTCAAGGTGTATCTTTGTCAACTATAAGTAGGAGCTCAATTTTAATAAATCCAGACATAAAGGAAGCACATCAATTGAGATCATGGTACGACTCTGAAGGAAAAGCCATATCCATGGCTTCTGTCAGCTCTGGCATGAGCCCCTCATCCAAGAGTGGGTCGAGATCCATGTACACTGACCGGGTCTCCTTGTCTCATATACTCCAAAACAAATCTTTGGGAGAAGAAAAGCCAATGTTCTTCAGCATAAGAGCATATGTCAGCTTTATTAAGCCTGATCAAACAATGTGGTATCGGGCTTGTAAGACATGCAACAAGAAGGTGACCGATGCCATTGGATCTGGATATTGGTGCGAAAGCTGCCAGAAAAACGACGAAGAATGCAGCTTAAGGTACATAATGGTCGTAAGAGTTTCTGATGCCAGTTGTGAGGCTTGGCTCTCCACATTCAATGCGGAAGCGGAGAGGATTGTTGGGTGCACTGCCGAAGAGCTTGACGGGCTCAAATCACAGATTGGAGAGGAGGCTTCATATCAGCTGAAACTCAAAGAAGCAACTTGGGTTCCACATTTATTTCGAGTTAGCGTCTCTCAGAATGAGTACAACAATGAGAAGAGGCAAAGGATCACTGTCAGGTCCGTTGCTCCAGTTGACTTCGCTGCTGAGTCCAGATTTTTGCTTGAAGAAATAGCAAAGATGAAAGCTTCGTAG 1872 43.16 MANAPTPGGISKILANPSPDSASDVPQVVLQVLDLKATGNRYMFTAADGDMKLKSILPSNLTSEVISGNIQNLGLIRVLDYSLNDIPNKPEKYLIVTKCEVVSSALEKEVKFEVKKEEADIVLKPKQELDDKSAVNTGSGILLKPKQELVAKSAAQIVHEQSTNMAPSARMSMTRRVHPLVYLNPYQGDWTIKVRVTDKGNLRTYKNAQGEGCVFNVVLTDEDGTQIQATMFNEAARKFYEKFSLGKVYYVSRGTLKVANKKFKTVQNDYEMTLNVNSQVDEVTNEAAFVPETKFNFVKIDMLGPHVNGRDLVDVIGVVQSVSPTMSIRRKINNETAPKRDVTIADETKKTVVVSLWNDLATTVGQELLDIADQSPIIALKYLRVGDFQGVSLSTISRSSILINPDIKEAHQLRSWYDSEGKAISMASVSSGMSPSSKSGSRSMYTDRVSLSHILQNKSLGEEKPMFFSIRAYVSFIKPDQTMWYRACKTCNKKVTDAIGSGYWCESCQKNDEECSLRYIMVVRVSDASCEAWLSTFNAEAERIVGCTAEELDGLKSQIGEEASYQLKLKEATWVPHLFRVSVSQNEYNNEKRQRITVRSVAPVDFAAESRFLLEEIAKMKAS 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1080955 1084241 + Carg09200-RA Car11g00189 156142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00189 623 Pfam Replication factor-A C terminal domain 467 613 IPR013955 -
Car11g00189 623 MobiDBLite consensus disorder prediction 1 22 - -
Car11g00189 623 Pfam Replication factor-A protein 1, N-terminal domain 6 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Car11g00189 623 Pfam OB-fold nucleic acid binding domain 190 275 IPR004365 GO:0003676
Car11g00189 623 Pfam Replication protein A OB domain 308 404 IPR031657 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00189 Car-Chr11:1080955 Car16g01142 Car-Chr16:9754883 3.65E-87 dispersed
Car11g00189 Car-Chr11:1080955 Car06g00537 Car-Chr6:3018858 1.80E-88 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00189 K07466 - csv:101208545 1089.33