Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00196 ATGCCGCCATTACCGTATCTGCATCTCAGAAGGTTTTTCATTCGGTCTCTTTCATCATCTTCGTATTTATCTGCCTCGTCGTCCTCAAGTTCTTTGAATGAAGCTTCGAAGAGCGTTGTTTTACGTCGAGATTTGACCTCTGTTTTCCACCATTTCCGTCGTCAAGGACCGGCATTGGGGTGTTCTTATCTATCCCAACTCTCGCTTTCTCATTCGTTCTTTTCCGAGTCCGGTGAGAATGATGTGGATCAATCATCGCAGTCGCTTGCGGCCGAGCTTCTTAAAGACCCCGATTTGGATCCTCTTCCCATTACGAAGCGCCTTCAGCTTATCTTTTCGCATGTTAAACCGAATCCGGAGTTAGTTCTCAATACGCTCAATCTCTCCTCGGAAGCTGGTCGAACTGTGTTAGGGTTTAACGAGTGGTTAATATCGAATCCTGATTTTCATCACACGGATGAGACTATATCGTATTTCGTTGATTATTTTGGTCGTAGAAAGGATTTCAATTCGATTCACGAAGTTCTTGCGAAGGGTTCAGGGATCAGTGGGGCTAAAACCCTGCGGTCGACTATTGATCGGTTCGCTCGTGCTGGACGACCCACAAAGTTGTTATCATTTTTCGAGACAATGGAGAAGAATTATGGATTTAAGAGGGATAAAGAGTCGATTAGGATGGTGGTGGAGAAGCTTTGTGAAAACGGCTACGCGAGCCATGCTGAGAAGATGGTCAAAGACTTAGCGCACGAATTTTTCCCAGACGAAGCAATTTGCGATGCTCTGATCAAAGGATGGTGCGTCGATGAGAAATTCGATGAAGCGAAAAGGCTGGCAGGTGAGATGTATAGGGGAGGGTTTGAGTTAGGGACAACGGCCTACAATGCTCTGCTTGATTGTGTTTGCAAGCTTTGTAGGAAAAAAGATCCATTTAAGCTTCAATCTGAGGCTGAGGAAATTCTGGTGGAAATGGATTGTCGTGGGGTTCCAAGAAACGTGGAAACTTTCAATGTACTGATTAATAATCTGTGCAAGATTAGGAAAACTACGGATGCACTAAATTTGTTTCATCGAATGGGGGAGTGGGGATGTCATCCTAACGCTGAAACGTTCCTTATTTTGATCAAAAGTTTGTATCAAGCGGCCAGGACGGGAGAAGGGGATGAAATGATTGACAGGATGAGGTCTGCGGGATATGCTGATGCACTTGATAAGAAGGCTTATTATGAGTTTCTGAAGATTTTGTGTGGGATCGAGAGGATTGATCATGCCCTGATTGTTTTTGCGAAGATGAAGAAGGATGGGTGTGAGCCTGGCATTAAGACATATGATCTACTGATGGGGAAACTCTGTGCCCATAATCGTCTGGACCGAGCAAATTCACTCTTTAATGAAGCTCAGAAACGGGGAGTTCCAGTCACTCCAAAAGCTTATCAGGTTGAGCCAAGGTATGCAAAGAAGCCAAAGGTAAAGAAGGTTGAGAAGAAGAGGGAGACGTTGCCAGAGAAAATGGCAAGGAAGAGGAGACGACTGAAGCAAATTCGATTGAGTTTTGTCAAGAAGCCAAAAAGAACAATGCGTAGAGCATTTTGA 1590 44.53 MPPLPYLHLRRFFIRSLSSSSYLSASSSSSSLNEASKSVVLRRDLTSVFHHFRRQGPALGCSYLSQLSLSHSFFSESGENDVDQSSQSLAAELLKDPDLDPLPITKRLQLIFSHVKPNPELVLNTLNLSSEAGRTVLGFNEWLISNPDFHHTDETISYFVDYFGRRKDFNSIHEVLAKGSGISGAKTLRSTIDRFARAGRPTKLLSFFETMEKNYGFKRDKESIRMVVEKLCENGYASHAEKMVKDLAHEFFPDEAICDALIKGWCVDEKFDEAKRLAGEMYRGGFELGTTAYNALLDCVCKLCRKKDPFKLQSEAEEILVEMDCRGVPRNVETFNVLINNLCKIRKTTDALNLFHRMGEWGCHPNAETFLILIKSLYQAARTGEGDEMIDRMRSAGYADALDKKAYYEFLKILCGIERIDHALIVFAKMKKDGCEPGIKTYDLLMGKLCAHNRLDRANSLFNEAQKRGVPVTPKAYQVEPRYAKKPKVKKVEKKRETLPEKMARKRRRLKQIRLSFVKKPKRTMRRAF 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1133328 1134917 + Carg09193-RA Car11g00196 156149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00196 529 Pfam Pentatricopeptide repeat domain 421 447 IPR002885 -
Car11g00196 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 288 IPR002885 -
Car11g00196 529 Pfam PPR repeat 260 285 IPR002885 -
Car11g00196 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 365 IPR002885 -
Car11g00196 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 437 IPR002885 -
Car11g00196 529 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PNM1, MITOCHONDRIAL 46 528 - -
Car11g00196 529 TIGRFAM PPR: pentatricopeptide repeat domain 334 367 IPR002885 -
Car11g00196 529 TIGRFAM PPR: pentatricopeptide repeat domain 441 472 IPR002885 -
Car11g00196 529 Pfam PPR repeat family 331 377 IPR002885 -
Car11g00196 529 PANTHER ATPASE EXPRESSION PROTEIN 3 46 528 - -
Car11g00196 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 438 472 IPR002885 -
Car11g00196 529 Gene3D Tetratricopeptide repeat domain 400 526 IPR011990 GO:0005515
Car11g00196 529 Gene3D Tetratricopeptide repeat domain 134 307 IPR011990 GO:0005515
Car11g00196 529 Gene3D Tetratricopeptide repeat domain 308 399 IPR011990 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car11g00196 Car13g00748 CCT
Car10g00272 Car11g00196 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00194 Car-Chr10:922940 Car11g00196 Car-Chr11:1133328 8.38E-38 dispersed
Car11g00167 Car-Chr11:913565 Car11g00196 Car-Chr11:1133328 2.68E-09 dispersed
Car11g00196 Car-Chr11:1133328 Car04g02038 Car-Chr4:16555064 6.58E-06 dispersed
Car10g00272 Car-Chr10:1295532 Car11g00196 Car-Chr11:1133328 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00196 - - cmax:111465769 993.801