Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00197 TCATTTCTCACGATTCATCGTTATAAAGCTTACACTCTTGTGGAATACTTCCCACTCTCTCTCTCTCTCTCTCTCTCCACACGACACGGCTACTTTCCTGTGCAGATCTTGAGCCATTTGCAGAACGTCGTCTGCAGCTCAGTCTGCATCGGGAAAATGAGGTCTCGGCTCTTCTCTTCCACTGGATCCGTCGCCGAACTTACTGGCTTTGGCATCTTGCTTCTCTTTCTACTTTCATGCTTCAGTTTCACTTCGACAGAAGCCTATGATGCACTTGATCCCAACGGGAACATCACCATCAAATGGGATGTTATGAGCTGGACTCCGGATGGCTATGTTGCTGTTGTTACAATGTACAACTTCCAGCAATACCGCCATATTCAAGCTCCAGGTTGGACACTGGGCTGGACATGGGCAAAGAAAGAAGTGATTTGGAGCATGATGGGAGCCCAAACAACGGAACAGGGAGACTGTTCAAGGTTCAAAGGAAATACTCCACATTGCTGCAAGAAAGATCCAACCGTTGTGGATCTATTGCCAGGAACTCCTTACAATCAGCAGATTGCAAATTGTTGCAAGGGTGGAGTGATAAACTCCTGGGCCCAAGACCCAGCCAATGCAGCAAGCTCATTTCAAGTCAGTGTTGGTGCTGCAGGAACGAGTAACAAAACTGTCAAACTCCCCAAAAACTTCACTCTTAAAGCACCGGGACCTGGATATACTTGTGGTCCAGCAAAGATTGTGAAGTCAACCAAATTTATATCTGGAGATAAAAGAAGAGTAACTCAAGCTTTGATGACTTGGAATGTTACATGCACCTATTCTCAATTCCTTGCTCAGAAGACACCCACTTGTTGTGTTTCCCTCTCTTCCTTCTACAATGATACCATCGTCAACTGCCCAACCTGCACTTGTGGATGTCAAAACAATACGGCAGGTTCTGGGAGCTGTGTGAATCCAGATTCTCCACATTTAGCTTCAGTGGTATCAACTCCTGATAAATCGGGCAACTATGAACCCCTGGTTCAGTGTACTAGCCACATGTGTCCCATTCGAGTCCATTGGCATGTGAAGCTGAATTACAAGGACTATTGGAGGGTGAAGATCACAATCACCAATTTCAATTACAGAATGAACTACACACTCTGGAATCTTGTGGCGCAGCATCCCAATTTTGATAACATAACTCAATTATTCAGCTTTAACTACAAGTCGTTGAGCCCCTATGGTGACCTAAATGATACTGCTATGTTATGGGGAGTTAAGTTCTACAATGATCTGCTCAATCAAGCTGGCCCTCTTGGTAATGTGCAGTCTGAGCTCCTATTCCGGAAAGACCAAAACACTTTCACTTTCGACAAGGGTTGGGCTTTTCCAAGAAGAGTTTATTTCAATGGTGATAACTGTGTGATGCCACCTCCAGAGGCCTATCCCTATTTGCCAAATGCCAGTTCCAGACCAGCTATGTCTTTACTTGCGACAGTGTTAATATCTCTGGCATTACTGTTGAATTTTGCTCTCTAA 1524 44.82 SFLTIHRYKAYTLVEYFPLSLSLSLSTRHGYFPVQILSHLQNVVCSSVCIGKMRSRLFSSTGSVAELTGFGILLLFLLSCFSFTSTEAYDALDPNGNITIKWDVMSWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGAQTTEQGDCSRFKGNTPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVINSWAQDPANAASSFQVSVGAAGTSNKTVKLPKNFTLKAPGPGYTCGPAKIVKSTKFISGDKRRVTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVNCPTCTCGCQNNTAGSGSCVNPDSPHLASVVSTPDKSGNYEPLVQCTSHMCPIRVHWHVKLNYKDYWRVKITITNFNYRMNYTLWNLVAQHPNFDNITQLFSFNYKSLSPYGDLNDTAMLWGVKFYNDLLNQAGPLGNVQSELLFRKDQNTFTFDKGWAFPRRVYFNGDNCVMPPPEAYPYLPNASSRPAMSLLATVLISLALLLNFAL 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1137936 1141889 + Carg09192-RA Car11g00197 156150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00197 507 Pfam COBRA-like protein 112 275 IPR006918 GO:0010215|GO:0031225
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car11g00197 Car13g00898 CCT
Car11g00197 Car13g00898 ECH
Car10g00271 Car11g00197 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00385 Car-Chr1:2190517 Car11g00197 Car-Chr11:1137936 0 dispersed
Car04g00510 Car-Chr4:2887830 Car11g00197 Car-Chr11:1137936 6.48E-73 dispersed
Car10g00271 Car-Chr10:1291713 Car11g00197 Car-Chr11:1137936 0 dispersed
Car11g00197 Car-Chr11:1137936 Car14g01031 Car-Chr14:8957254 0 dispersed
Car11g00197 Car-Chr11:1137936 Car11g00198 Car-Chr11:1141442 0 tandem
Car04g00511 Car-Chr4:2888909 Car11g00197 Car-Chr11:1137936 4.12E-76 transposed
Car19g00552 Car-Chr19:7077321 Car11g00197 Car-Chr11:1137936 5.35E-51 transposed
Car10g00270 Car-Chr10:1288557 Car11g00197 Car-Chr11:1137936 0 wgd
Car11g00197 Car-Chr11:1137936 Car13g00898 Car-Chr13:9356004 2.14E-89 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00197 - - csv:101213424 885.56