Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00198 ATGGAAGTTAATACCTACAGTGATCTATCACACAAAATTCTTTTTCAAATGGAATGCTACTCGGCTCGACAGAAAAGAGTTGTACTCTTAGCACTTCTGATCTTTGCAACTTTCTATTCAACTGGGGCTTATGATCCATTGGATCCGAATGGAAACATAACAATCAAATGGGATGTAGTTTCTTGGACGCCAGATGGATATGTTGCTGTAGTGACAATGAACAATTTTCAGATGTACCGCCATATCAATGCACCAGGATGGACCCTGGGCTGGTCATGGGCCAAGAAAGAAGTGATATGGTCTATGGTGGGAGCTCAGACAACAGAGCAAGGAGATTGTTCCAAGTTCAAAGGAAACGTACCTCATTGCTGCAAGAAAACCCCTATAGTTGTTGATTTGCTCCCCGGTGTTCCTTACAACCAGCAATTCTCCAATTGCTGCAAGGGTGGAGTGTTGGCTTCTTGGGGACAGGACCCAGTAGGTTCAGTCTCTGCCTTCCAGGTGAGTGTTGGACTAGCTGGCACTTCGAACAAAACGGTAAAGTTGCCGAAGAACTTCACTCTGCTCGGTCCAGGACCAGGCTACACATGTGGACCTGCAAAAGTTGTGCCTTCTACAGTCTTCCTTACTCCTGATCGCCGGAGGAAAACTCAAGCACTGAGTAAGCTTGTTGCTAATTTCATGTTGTGCTCCTTTCAGATAAAGCTCTTGAAGTTGATTTATGCTGCTTCTGATGCAGTGACATGGAATGTAACCTGCACTTACTCACAGTTTCTGGCCTCTAAGAACCCAACTTGCTGCGTATCACTCTCGACTTTCTACAATGATACGATCACTTCTTGCCCAACCTGTGCATGTGGCTGCCAGAACAAACACAATTGTATAAAGAGTAACTCAAAGCTACTGCACAAGGACGGAATAAATACTCCTAAAAAGGATAATACGCCTTTACTACAGTGCACCCATCACATGTGTCCTGTTCGAGTACACTGGCACGTAAAAATTAATTACAAGGATTACTGGCGTGTGAAGGTTGCTGTAACCAACTTCAACTACAGGATGAACTATACGCTATGGACACTGGCAGTGCAGCATCCAAATCTGAATAATGTAACTCAAGTCTTCAGTTTTGACTACAAACCCCTAGTTCCCTATGAATCCATTAATGATACTGGCATGTTCTATGGCATGAAATTCTACAATGATCTATTAATGGAAGCAGGGCCATTTGGAAATGTGCAATCTGAAGTACTAATGAAGAAGGACAAGGATACATTTACCTTCAAGCAGGGTTGGGCCTTTCCTAGAAAAGTATACTTCAATGGCGACGAATGTCAGATGCCACCACCAGAATCATACCCATATCTACCCAACTCTGCTCCTGAAGGCTCCAGTGCAGTTAGCAAGTTGACCACCTCCTTGCTTTTGATAATCTGGCTTTTGTGGTGA 1449 43.82 MEVNTYSDLSHKILFQMECYSARQKRVVLLALLIFATFYSTGAYDPLDPNGNITIKWDVVSWTPDGYVAVVTMNNFQMYRHINAPGWTLGWSWAKKEVIWSMVGAQTTEQGDCSKFKGNVPHCCKKTPIVVDLLPGVPYNQQFSNCCKGGVLASWGQDPVGSVSAFQVSVGLAGTSNKTVKLPKNFTLLGPGPGYTCGPAKVVPSTVFLTPDRRRKTQALSKLVANFMLCSFQIKLLKLIYAASDAVTWNVTCTYSQFLASKNPTCCVSLSTFYNDTITSCPTCACGCQNKHNCIKSNSKLLHKDGINTPKKDNTPLLQCTHHMCPVRVHWHVKINYKDYWRVKVAVTNFNYRMNYTLWTLAVQHPNLNNVTQVFSFDYKPLVPYESINDTGMFYGMKFYNDLLMEAGPFGNVQSEVLMKKDKDTFTFKQGWAFPRKVYFNGDECQMPPPESYPYLPNSAPEGSSAVSKLTTSLLLIIWLLW 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1141442 1143816 - Carg09191-RA Car11g00198 156151

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00198 482 Pfam COBRA-like protein 67 256 IPR006918 GO:0010215|GO:0031225
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00198 - - - cmo:103494059 892.493
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car10g00270 Car11g00198 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00386 Car-Chr1:2192880 Car11g00198 Car-Chr11:1141442 0 dispersed
Car10g00270 Car-Chr10:1288557 Car11g00198 Car-Chr11:1141442 0 dispersed
Car11g00198 Car-Chr11:1141442 Car14g01031 Car-Chr14:8957254 0 dispersed
Car11g00197 Car-Chr11:1137936 Car11g00198 Car-Chr11:1141442 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g445 . . Bda06g00512 Bda15g00631 . . . Bma12g00957 . . Cma10g00288 Cma11g00220 Car10g00270 Car11g00198 Sed08g0289 Cpe20g00086 Cpe04g01448 Bhi02g00080 Tan09g2022 Cmetu02g1379 . Hepe09g0286 . . Cla06g01530 Cam06g1687 Cec06g1749 Cco06g1747 Clacu06g1654 Cmu06g1601 Cre06g2413 . . . . Lsi02g00135 Csa01g00618 . . . . . . Bpe07g00746 . . Bma08g00250 . Cmo10g00306 Cmo11g00223 . . . . . Cpe18g00714 . . . . . . . . . . . . . . Lsi06g01401 Csa01g00340 Chy02g02402 Cme02g01812
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car11g00197 CCT,CST,ECH 100 499 COBRA Gene Family AT5G60920 81.0 8.6e-211 729.9
Car10g00271 CCT,CST,ECH 85 484 COBRA Gene Family AT5G60920 80.3 3.6e-209 724.5
Car14g01031 . 42 450 COBRA Gene Family AT5G60920 74.8 4.4e-199 691.0
Car01g00385 . 22 426 COBRA Gene Family AT5G60920 74.3 1.3e-193 672.9
Car10g00270 CST 48 445 COBRA Gene Family AT5G60920 68.4 7.4e-178 620.5
Car11g00198 CST 55 476 COBRA Gene Family AT5G60920 63.6 2.1e-172 602.4
Car01g00386 . 31 446 COBRA Gene Family AT5G60920 59.6 5.3e-152 534.6
Car13g00898 CCT,ECH 14 238 COBRA Gene Family AT5G60920 54.2 1.4e-72 270.8
Car04g00511 . 59 259 COBRA Gene Family AT5G60920 53.7 3.5e-63 239.6
Car04g00510 . 25 173 COBRA Gene Family AT5G60920 65.1 1.1e-59 228.0
Car10g00271 CCT,CST,ECH 55 481 COBRA Gene Family AT3G02210 73.5 1.0e-204 709.9
Car11g00197 CCT,CST,ECH 70 504 COBRA Gene Family AT3G02210 72.9 8.6e-204 706.8
Car14g01031 . 12 448 COBRA Gene Family AT3G02210 73.3 4.7e-202 701.0
Car01g00385 . 8 418 COBRA Gene Family AT3G02210 75.0 2.1e-197 685.6
Car10g00270 CST 20 448 COBRA Gene Family AT3G02210 66.1 3.3e-179 625.2
Car11g00198 CST 29 480 COBRA Gene Family AT3G02210 62.6 8.4e-175 610.5
Car01g00386 . 5 449 COBRA Gene Family AT3G02210 57.3 2.0e-152 536.2
Car13g00898 CCT,ECH 14 239 COBRA Gene Family AT3G02210 54.2 1.2e-72 271.2
Car04g00511 . 59 250 COBRA Gene Family AT3G02210 56.7 3.3e-62 236.5
Car04g00510 . 14 173 COBRA Gene Family AT3G02210 62.1 6.2e-61 232.3
Car10g00271 CCT,CST,ECH 55 483 COBRA Gene Family AT3G29810 74.9 2.3e-201 698.7
Car11g00197 CCT,CST,ECH 70 498 COBRA Gene Family AT3G29810 73.3 2.4e-198 688.7
Car14g01031 . 27 448 COBRA Gene Family AT3G29810 71.8 6.1e-194 674.1
Car01g00385 . 8 426 COBRA Gene Family AT3G29810 71.8 5.3e-190 661.0
Car10g00270 CST 31 429 COBRA Gene Family AT3G29810 66.9 1.6e-173 606.3
Car11g00198 CST 37 462 COBRA Gene Family AT3G29810 63.1 5.5e-171 597.8
Car01g00386 . 14 448 COBRA Gene Family AT3G29810 59.1 4.1e-150 528.5
Car13g00898 CCT,ECH 14 242 COBRA Gene Family AT3G29810 53.4 2.9e-71 266.5
Car04g00511 . 59 250 COBRA Gene Family AT3G29810 55.7 1.3e-63 241.1
Car04g00510 . 23 167 COBRA Gene Family AT3G29810 67.6 9.7e-59 224.9
Car10g00270 CST 32 356 COBRA Gene Family AT5G15630 84.0 2.3e-177 618.6
Car11g00198 CST 39 389 COBRA Gene Family AT5G15630 77.5 3.0e-172 601.7
Car11g00197 CCT,CST,ECH 83 413 COBRA Gene Family AT5G15630 74.4 9.9e-152 533.5
Car10g00271 CCT,CST,ECH 68 398 COBRA Gene Family AT5G15630 74.1 1.7e-151 532.7
Car14g01031 . 27 358 COBRA Gene Family AT5G15630 67.2 2.2e-143 505.8
Car01g00386 . 9 359 COBRA Gene Family AT5G15630 67.7 3.2e-142 501.9
Car01g00385 . 2 336 COBRA Gene Family AT5G15630 66.6 1.2e-141 500.0
Car04g00511 . 59 250 COBRA Gene Family AT5G15630 53.1 8.3e-58 221.5
Car13g00898 CCT,ECH 14 146 COBRA Gene Family AT5G15630 55.4 1.0e-47 188.0
Car10g00271 CCT,CST,ECH 55 261 COBRA Gene Family AT5G60950 58.2 3.2e-65 245.4
Car14g01031 . 25 218 COBRA Gene Family AT5G60950 62.1 4.2e-65 245.0
Car01g00385 . 18 198 COBRA Gene Family AT5G60950 61.9 7.9e-64 240.7
Car11g00197 CCT,CST,ECH 82 276 COBRA Gene Family AT5G60950 57.1 6.7e-63 237.7
Car10g00270 CST 44 224 COBRA Gene Family AT5G60950 56.4 2.7e-56 215.7
Car01g00386 . 8 206 COBRA Gene Family AT5G60950 53.5 2.8e-53 205.7
Car11g00198 CST 51 257 COBRA Gene Family AT5G60950 50.2 2.8e-53 205.7
Car14g01031 . 14 428 COBRA Gene Family AT1G09790 52.4 1.2e-133 473.8
Car10g00270 CST 36 427 COBRA Gene Family AT1G09790 53.9 3.9e-132 468.8
Car10g00271 CCT,CST,ECH 69 469 COBRA Gene Family AT1G09790 53.6 3.9e-132 468.8
Car11g00197 CCT,CST,ECH 72 484 COBRA Gene Family AT1G09790 52.0 8.6e-132 467.6
Car11g00198 CST 41 460 COBRA Gene Family AT1G09790 50.1 1.2e-128 457.2
Car01g00385 . 8 406 COBRA Gene Family AT1G09790 52.0 2.9e-127 452.6
Car04g00511 . 57 249 COBRA Gene Family AT1G09790 61.3 1.6e-69 260.8
Car04g00510 . 4 170 COBRA Gene Family AT1G09790 66.1 5.3e-65 245.7
Car06g01315 CST 38 635 COBRA Gene Family AT4G16120 66.4 1.1e-250 863.2
Car04g00880 CST 79 676 COBRA Gene Family AT4G16120 52.7 3.0e-197 685.6
Car14g01418 CST 1 465 COBRA Gene Family AT4G16120 66.7 5.3e-194 674.9
Car16g00854 CST 66 649 COBRA Gene Family AT4G16120 51.7 5.3e-194 674.9
Car14g01416 . 93 224 COBRA Gene Family AT4G16120 62.9 1.7e-43 174.9
Car06g01315 CST 13 656 COBRA Gene Family AT3G16860 60.6 1.1e-236 816.6
Car16g00854 CST 62 665 COBRA Gene Family AT3G16860 51.7 1.2e-190 663.7
Car04g00880 CST 65 673 COBRA Gene Family AT3G16860 50.5 1.6e-190 663.3
Car14g01418 CST 1 449 COBRA Gene Family AT3G16860 65.1 1.1e-178 624.0
Car14g01416 . 73 224 COBRA Gene Family AT3G16860 54.9 4.2e-42 170.2
Car06g01315 CST 16 647 COBRA Gene Family AT5G49270 59.8 7.4e-236 813.9
Car16g00854 CST 70 647 COBRA Gene Family AT5G49270 50.7 4.5e-193 671.8
Car04g00880 CST 79 676 COBRA Gene Family AT5G49270 50.7 1.9e-191 666.4
Car14g01418 CST 4 449 COBRA Gene Family AT5G49270 62.5 5.5e-175 611.7
Car14g01416 . 71 224 COBRA Gene Family AT5G49270 56.8 1.9e-45 181.4
Car04g00880 CST 2 697 COBRA Gene Family AT3G20580 57.7 3.1e-242 835.1
Car16g00854 CST 60 659 COBRA Gene Family AT3G20580 59.0 5.5e-231 797.7
Car06g01315 CST 34 652 COBRA Gene Family AT3G20580 54.4 8.6e-208 720.7
Car14g01418 CST 1 467 COBRA Gene Family AT3G20580 56.2 6.4e-163 571.6
Car04g00880 CST 67 698 COBRA Gene Family AT4G27110 61.0 4.3e-236 814.7
Car16g00854 CST 59 664 COBRA Gene Family AT4G27110 59.9 1.4e-229 793.1
Car06g01315 CST 31 652 COBRA Gene Family AT4G27110 52.4 3.8e-200 695.3
Car14g01418 CST 1 459 COBRA Gene Family AT4G27110 54.3 2.1e-158 556.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001485 1 3 2 1 2 2 4 2 2 1 2 2 4 3 3 4 3 2 4 2 3 2 3 3 3 3 2 2 2 1 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g00198 Car_Chr11 FPKM 0.604627 1.025725 3.383588 3.075799 135.789886 129.938324 115.445946 0.412544 0.280806 0.16761