Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00202 ATGGAGGAGAGTGAGAGTGAGAGTGAAATCCGAATCAAAACCCTAACCGGAGAATCACTGACCATCTCCATTTCCGGCAACAGAACAATTGAGGACCTTAAACTTCTACTCAGGAAGAATTTCCCCTCCGCCACCGTTTCCCCTAATTTTCACCTCTTTTCTAAGGCAATGAACATCTCCATCTCCCTCTATCCCTCTCTATACGACTACTTTTGGTTTTGCTTGATGATACTTGACATTTTCGGTACTAAGTTGAAACCGCAGAGTGAAATTAGTGCATGCCGCATTGACAAAGGCGAATTTCTAGTGCTCATTCCATTTACTAAAAAGGAATCTTCCAAGCCCCAACTTCGCGATCAATATGAACAAGGATCCAGTGTTTCGGGCGGAAGCTCAATTTCTCAATTCGCTGATTCTGCGTGGTCCGATATGGTGCAGGATTTATCGTATTTACATGACTGTTCTGTTCAAGGGAGAGAGGGAAATGGCCTTGAGAGTGAGAGAGGGAATTTTGAAGCTGGAGGTGTTGATGCTGAACTGGCAGCGACGTGTAGTACCGGTTCTTCTAGTTTGAAAGCAAAAGGCAAAAAGGGTTTCGTTTGTAATGACTCGAATGGGATTTTAGATGACATTTTGAGGAACTTGTTATCGTCTCCTACTGTGGAATTTTTAAGCGAATACAATTGTGAAAACTTGATTAAACTTTTGGAGTCTGTGGATTGCTTATCAGACCCACGTAATGAGAAGTGCTTGTTGGCAAAACAAGCTAATTCACGAAGTGGCAGCAGAAAAGCGCCAAATGGAACACGTTGTTCTTCATGCCTATGTCCAGTGTGGCTGAAGAAGATAATGAAGGCATTTGCTTTCTTAAATGTTCTATCAATGTTTGCTCAACTACGAGAAGAAATAATAACTGCAAGTCGGTTGGAACAAGCAATTGACCTGCTGCAGAAACATGGAATTACGCTTCGTATGGAGGACATGAAGCATCTCTCTCTTCTCTGTCCCAAGGTAGTACATTTTGCAAGTGGCACTTTGGAAGATAGCTATGATGACAAGATTATCATTGTCATTTATTTGACCGCACAAAATAGTCGATGGACAGCTGATAATACGGCATATAAACTGTCCAAAGCACCAACAGATATCACTCCATTGAAGAGGCGGGAAAAATCATTTAAATTTTACCTTTGGGATGCTATTAAAGGCCATATGCTTAGACATGGAAGCAGAAGTGAGATATGTGTGTCTTTTTCTTTGGAAGATTTAATTACGTCAAAAGCGTCTGCTGTGGATGGAAATGAAGCGAAGCGAGCAAAAAAAAGTGACATGGCTTCGTCGAGTTCTAAATCTGACCGAGTACAATGTCATGACACTTCGAAACTCTTACCTGAGAATATGGTTGAACATCTTGAAAAGGGTATTGGATCTGAGGGCCAGATAGTGCACGTCGAAGATATTGCGGCTAGAAAAGCTAATTATGTGGAAATTCCCGAGGAACTTTCTAATAATGTTATATCAGCACTTAAATGTATTGGAGTAGAAAAGTTGTATAGCCATCAGACAAGGTCGATAGAAGCCTCCCTGGCTGGAAATCATGTTGCAGTTGCTACAATGACATCAAGTGGAAAATCTCTGTGCTATAACTTGCCAGTTCTTGAATCAATGTCTCAAGATGTCTCATCATGTGCTCTTTACTTATTTCCAACTAAGGCCTTAGCTCAAGATCAACTCAGAAGTTTGCTTGTCATGATGAAAGGGTTTAATGCTGACCTTAACATTGGCGTTTATGATGGTGATACCTCACAGTCTGACCGAATTTTATTGCGTGATAATGCTAGGCTGTTAATCACAAATCCTGATATGCTACATCTATCAATCCTGCCACAGCACAGACAATTTAGTCGGATATTATCAAATCTGCGGTTTATAGTCATTGATGAGGCTCATACTTATAAGGGAGCATTTGGATGTCATACTGCACTAATAATACGGAGACTTCGCCGGCTTTGCTCTCATGTGTATGGAAGTGATCCTTCTTTTATATTCTGTACAGCAACTTCTGCAAATCCACGCCAACATTGCATGGAACTTGGAAGTCTGTCAAGCTTAGAGCTGATTGAAAATGATGGAAGTCCTTCTGCCAGAAAACTATTCATCCTCTGGAATCCTATTATGGCCTCAAAAAGTTCTGAGAGAGCCCAATTATGGACATTGCGAGGCTCTTTGCAGAAATGGTTCAGCATGGACTTCGCTGCATTGCTTTTTGTAAAACTCGTAAACTTTGTGAACTTGTTTTATGCTACACGTAGGCGCGAAATTCTTAAGGAGAGAGCACCCCATCTGGTTCAGTCTGTGTGTGCTTATCGTGCTGGATACACTGCTGAGGATAGGAGGAGAATAGAGAGTGACTTTTTTGGGGGAAACCTTTGTGGTGTTGCTGCGACAAATGCCCTTGAATTGGGTATTGATGTAGGCCACATTGATGCAACTCTGCATTTGGGCTTTCCTGGTAGTATTGCTAGCTTGTGGCAACAAGCAGGCAGGGCAGGAAGGAGAGAAAAGACCTCTCTTTCTGTATATGTTGCATTTGAAGGGCCTCTTGATCAATATTTCATGAAACACCCTGAAAAACTTTTTGGGAGCCCAATTGAGTGCTGCCATATTGATGCTGAAAACCAACAGGTTCTTGAACAGCATTTGTTGTGTGCTGCATATGAACACCCAGTTTGTATGGTTTATGATCAGAATTTGTTTGGTCCTGGCTTAAACACTGCCCTAGTGTCTCTAAAAAGTAGAGGAGATTTGATGCCTGCACCATCATGTGGTTCATCCAAAAGTATTTGGACTTATATTGGGAAAGAGAAAATGCCTTCACGCTCAGTTAGTATCCGAGCGATTGAAGCAGAGAGATACAAAGTTGTAGATCAGCGCCGAAATGAAGTTCTCGAAGAGATTGAGGAAAGCACGGCTTTCTTTCAGGTTTCCGGCTATGTGGTTCAGGTTTATGAAGGTGCTGTTTATATGCATCAAGGACGAACTTATCTGGTCAAAAGCTTGAATTTGTCAACTATGCTTGCTTTCTGTGAAGAAGCTGATCTAAAATATTACACAAAAACACGTGATTACACTGACGTTCATGTTATTGGTGGTAGTTTGGCCTATCCAAGGAGAGCTCCAAATATTCCGCTCTTAAAAACAACTGCACAAGCAAATGATTGCAGAGTTACCACCACTTGGTTTGGTTTCTATCGAATATGGAAAGGAAGTAATCAAATTTTTGACACAGTGGACCTCTCCCTTCCAAAATATTCGTATAACTCTCAGGCAGTTTGGATTCCAGTACCACTATCTATAAAAGAAGAGGTGAAGAGGAAAAACTATGACTTTCGTGCAGGCTTGCATGCTGCTTCACATGCTCTTCTGAATGTAGTACCATTTTCAGCATATTTTCAATCTCAGCTCATCACTGTTTCTTGCAGACGTATAATTTGCAACATGTCTGACTTGGCTCCTGAATGTGCAAATCCTCATGATTCTCGCTATTTTCCAGAAAGGATTCTGTTGTATGATCAACATCCTGGAGGAACTGGTGTGTCACTTCAGATTCAACCCGTTTTCATAGAGCTGTTGCATGCTGCTTTAGAACTTCTCACCTCTTGCTGCTGCTTCGGAGAGACCGGCTGCCCTAATTGTGTCCAAAGTCTGGCCTGTCACGAATACAACGAGGTTTTACACAAGGATGCAGCCAGTTTAATTATCAAGATTATGAAGTACTTGCATGTGATTTCGATGAGACTTGCGAACTGTAAGGCGATTCGGAGGCAGATCGCTCTTTCGCACAAATCAGAGAACTATTGTGTCACATCTCCCAATTATATGTGCTGA 3888 41.64 MEESESESEIRIKTLTGESLTISISGNRTIEDLKLLLRKNFPSATVSPNFHLFSKAMNISISLYPSLYDYFWFCLMILDIFGTKLKPQSEISACRIDKGEFLVLIPFTKKESSKPQLRDQYEQGSSVSGGSSISQFADSAWSDMVQDLSYLHDCSVQGREGNGLESERGNFEAGGVDAELAATCSTGSSSLKAKGKKGFVCNDSNGILDDILRNLLSSPTVEFLSEYNCENLIKLLESVDCLSDPRNEKCLLAKQANSRSGSRKAPNGTRCSSCLCPVWLKKIMKAFAFLNVLSMFAQLREEIITASRLEQAIDLLQKHGITLRMEDMKHLSLLCPKVVHFASGTLEDSYDDKIIIVIYLTAQNSRWTADNTAYKLSKAPTDITPLKRREKSFKFYLWDAIKGHMLRHGSRSEICVSFSLEDLITSKASAVDGNEAKRAKKSDMASSSSKSDRVQCHDTSKLLPENMVEHLEKGIGSEGQIVHVEDIAARKANYVEIPEELSNNVISALKCIGVEKLYSHQTRSIEASLAGNHVAVATMTSSGKSLCYNLPVLESMSQDVSSCALYLFPTKALAQDQLRSLLVMMKGFNADLNIGVYDGDTSQSDRILLRDNARLLITNPDMLHLSILPQHRQFSRILSNLRFIVIDEAHTYKGAFGCHTALIIRRLRRLCSHVYGSDPSFIFCTATSANPRQHCMELGSLSSLELIENDGSPSARKLFILWNPIMASKSSERAQLWTLRGSLQKWFSMDFAALLFVKLVNFVNLFYATRRREILKERAPHLVQSVCAYRAGYTAEDRRRIESDFFGGNLCGVAATNALELGIDVGHIDATLHLGFPGSIASLWQQAGRAGRREKTSLSVYVAFEGPLDQYFMKHPEKLFGSPIECCHIDAENQQVLEQHLLCAAYEHPVCMVYDQNLFGPGLNTALVSLKSRGDLMPAPSCGSSKSIWTYIGKEKMPSRSVSIRAIEAERYKVVDQRRNEVLEEIEESTAFFQVSGYVVQVYEGAVYMHQGRTYLVKSLNLSTMLAFCEEADLKYYTKTRDYTDVHVIGGSLAYPRRAPNIPLLKTTAQANDCRVTTTWFGFYRIWKGSNQIFDTVDLSLPKYSYNSQAVWIPVPLSIKEEVKRKNYDFRAGLHAASHALLNVVPFSAYFQSQLITVSCRRIICNMSDLAPECANPHDSRYFPERILLYDQHPGGTGVSLQIQPVFIELLHAALELLTSCCCFGETGCPNCVQSLACHEYNEVLHKDAASLIIKIMKYLHVISMRLANCKAIRRQIALSHKSENYCVTSPNYMC 1295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1162625 1174754 - Carg09187-RA Car11g00202 156155

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00202 1295 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 564 873 IPR027417 -
Car11g00202 1295 Gene3D - 487 703 IPR027417 -
Car11g00202 1295 Pfam Helicase conserved C-terminal domain 768 853 IPR001650 -
Car11g00202 1295 MobiDBLite consensus disorder prediction 435 454 - -
Car11g00202 1295 Pfam DEAD/DEAH box helicase 519 689 IPR011545 GO:0003676|GO:0005524
Car11g00202 1295 Gene3D - 754 909 IPR027417 -
Car11g00202 1295 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 755 895 IPR001650 -
Car11g00202 1295 CDD DEXHc_Hrq1-like 517 698 - -
Car11g00202 1295 Pfam MrfA Zn-binding domain 1153 1233 IPR018973 -
Car11g00202 1295 SMART ultradead3 513 719 IPR014001 -
Car11g00202 1295 CDD SF2_C_Hrq 719 863 - -
Car11g00202 1295 SMART helicmild6 773 854 IPR001650 -
Car11g00202 1295 PANTHER ATP-DEPENDENT HELICASE HRQ1 21 1255 - -
Car11g00202 1295 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 525 706 IPR014001 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00202 - - - bhj:120070581 1900.56
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00202 Car-Chr11:1162625 Car13g00880 Car-Chr13:9269409 2.16E-07 dispersed
Car11g00202 Car-Chr11:1162625 Car14g01834 Car-Chr14:14266770 6.47E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g427 . . . . . . . . . . . Cma11g00226 . Car11g00202 Sed08g0297 . Cpe04g01445 Bhi02g00060 Tan09g2007 Cmetu02g0001 . . . . Cla06g01524 Cam06g1681 Cec06g1743 Cco06g1741 Clacu06g1648 Cmu06g1595 Cre06g2406 . . Cone13ag0024 . . . . . . Blo15g00344 . . . . . . . . Cmo11g00229 . . . . . . . . . . . . . . . . . . . . Lsi06g01393 Csa01g00335 Chy02g02407 Cme02g01807
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003378 1 12 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 4 4 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g00202 Car_Chr11 FPKM 4.642857 6.226593 7.234687 7.044484 7.401368 8.634086 7.087362 13.341085 11.399253 10.967128