Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00230 ATGGAGCCGATGGACATAGTTGGAAAGTCTAAAGAGGACGCCTCGCTTCCTAAGGCGACTATGACTAAAATTATCAAAGAGATGTTGCCCCCTGATGTTCGTGTTGCAAGAGATGCCCAAGATCTTCTGATTGAGTGTTGTGTAGAGTTTATAAACCTTGTGTCGTCGGAGTCCAATGAAGTTTGTAGCAAAGAAGATAAAAGAACAATTGCACCTGAGCACGTGCTCAAGGCTCTTGAGGTGCTTGGTTTTAGTGAGTACATTGAGGAAGTTTATGCTGCATATGAACAACACAGGCTCGAAACTATGGTAATGCTCCGCGAGCAAGACTCGTTGAAAGGTGGAAAGTGGAGTAATGGAGCCGAGATGACTGAAGAAGAAGCTTTGGCTGAGCAGCAAAGAATGTTTGCAGAAGCACGTGCAAGAATGAATGGGAGTAACACCGCTCCGAAGCAACTGGAGCCTGAGCAAAGTTTAGAGAGCTAA 486 45.27 MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEDKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMVMLREQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGSNTAPKQLEPEQSLES 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1293831 1296652 - Carg09159-RA Car11g00230 156183

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00230 161 MobiDBLite consensus disorder prediction 141 161 - -
Car11g00230 161 MobiDBLite consensus disorder prediction 145 161 - -
Car11g00230 161 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00230 K21751 DR1, NC2-beta; down-regulator of transcription 1 - csv:101214627 295.434
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01107 Car-Chr2:7650403 Car11g00230 Car-Chr11:1293831 2.69E-08 dispersed
Car10g00245 Car-Chr10:1164343 Car11g00230 Car-Chr11:1293831 3.66E-109 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car10g00245 . 9 157 CCAAT-DR1 Transcription Factor Family AT5G08190 84.6 6.3e-64 240.7
Car11g00230 . 1 157 CCAAT-DR1 Transcription Factor Family AT5G08190 80.9 2.4e-63 238.8
Car10g00245 . 9 159 CCAAT-DR1 Transcription Factor Family AT5G23090 83.4 4.6e-67 251.1
Car11g00230 . 1 156 CCAAT-DR1 Transcription Factor Family AT5G23090 81.4 4.3e-65 244.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004258 4 2 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 0 1 1 1 1 1 1 1 0 3 2 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4243 PF00808 CBFD_NFYB_HMF 3.20E-22 CL0012 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g00230 Car_Chr11 FPKM 9.691507 7.941797 5.837808 5.741941 4.833929 4.740786 4.916627 12.993844 12.022317 12.288074