Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00236 ATGACTTGGAGGAGAGTGTTGAAGTCCGTGCAGGCACTTTTGGCCCACGGTTCACTCTTCTGTTTCACGCTCTTGCTCGTTCTCAAGCTCGATCATTTCGTCTCCCACAGTTGGTGGGTTATTTTTTTCCCACTTTGGGTGTTTCATGTCGTTGTTGCTCGGGGAAGGTTCTCATTACCTGCCCCATCTCTTCCTCATAATCGCCATATTGACTCTGTTTTCTATTTGGTACCAAATGGTTTCTTTGATATGACATCATTTGTGAGTTTGCTATGTGTTTCTGTTGAACAGTGGGCACCGTGCCATGCCGTTGTCTCCACGCCTTTGCTTGTAACATTTGAATTACTTCTTTGTATATACCTCGAGAGCCTGTCTGTTTATGGTTTTCCTGCTGTGAATTTGAAGATTGTCTTTCTACCAATGTGTAGATCACTAATGCCCGGTGACGACGAAAGCATGAGCGATGAGGCAATATGGGAAACTCTTCCTCACTTTTGGGTTGCCATTTCAATGGTCTTCTTCGTCGCTGCTACAGTGTTTACTCTACTGAAGCTATGTGGGAGTGTTGGTGCTCTTGGCTGGTGGGACTTATTTATTAACTTTGGCATTGCGGAGTGCTTTGCGTTTCTCGTCTGTACAAAGTGGTCTAATCCTGTGATTCATAGAAATATTCAAACAAGAGAAACTTGTTCATCATCAGCCGTAGTTAGATATCTAGATTGGAACAACGGTCTGATGGTTTATCCAGAGCAGGATGAGCATCAAGACAGAATGTGTGGCCTTCAAGACATTGGCGGCCATATCATGAAAATTCCCATAATTGTTTTTCAAGTCCTACTTTGCATGTATTTAGAGGGAACACCTGCGAGCGCAAAACATATACCACTTCCTGTCCTTTTCTCGCCCCTTTTTATACTGCAAGGTGCTGCTGTTATTTATGCGGCATCTAGATTGTTAGAGAAAGTTATACTTCTCTTAAGAGGTGGAACAGGCACTGCCCCGTATCTCAGTTTTTCTGCTAGGGCTCATGCCTTCTTGGAGTTCTTTCATCATGGTTCGAGGCTATTGGGATGGTGGTCAATTGATGAAGGCAGTAGAGAGGAGCAGGCACGACTGTACCACGAGGGTGCCTCAGGGTACAATACGTTTAGTGGATATCCTCCCGAGATTGTGAAGAAGATGCCCAAGAAAGATCTTGCCGAGGAGGTCTGGCGCCTTCAAGCTGCATTAGGGGAGCAAACAGAAATCACCAAATACAGTCAGCAGGAATATGAAAGACTTCAAAATGAAAAGGTGTTATGTCGGGTTTGTTTCGAGGGGGAAATTAGCGTGGTTCTTCTTCCATGTAGGCATCGTGTACTATGCAGTACCTGCTGTGAGAAGTGTAAAAAGTGCCCAATTTGTCGTGTCTGTATCGAAGAACGATTAGCGGTATACGATGTTTAG 1446 44.54 MTWRRVLKSVQALLAHGSLFCFTLLLVLKLDHFVSHSWWVIFFPLWVFHVVVARGRFSLPAPSLPHNRHIDSVFYLVPNGFFDMTSFVSLLCVSVEQWAPCHAVVSTPLLVTFELLLCIYLESLSVYGFPAVNLKIVFLPMCRSLMPGDDESMSDEAIWETLPHFWVAISMVFFVAATVFTLLKLCGSVGALGWWDLFINFGIAECFAFLVCTKWSNPVIHRNIQTRETCSSSAVVRYLDWNNGLMVYPEQDEHQDRMCGLQDIGGHIMKIPIIVFQVLLCMYLEGTPASAKHIPLPVLFSPLFILQGAAVIYAASRLLEKVILLLRGGTGTAPYLSFSARAHAFLEFFHHGSRLLGWWSIDEGSREEQARLYHEGASGYNTFSGYPPEIVKKMPKKDLAEEVWRLQAALGEQTEITKYSQQEYERLQNEKVLCRVCFEGEISVVLLPCRHRVLCSTCCEKCKKCPICRVCIEERLAVYDV 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1328627 1334690 + Carg09153-RA Car11g00236 156189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00236 481 Pfam Transmembrane Fragile-X-F protein 28 96 IPR019396 -
Car11g00236 481 Pfam Transmembrane Fragile-X-F protein 84 306 IPR019396 -
Car11g00236 481 Pfam Zinc finger, C3HC4 type (RING finger) 431 474 - -
Car11g00236 481 ProSiteProfiles Zinc finger RING-type profile. 434 469 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car10g00236 Car11g00236 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01965 Car-Chr4:13757793 Car11g00236 Car-Chr11:1328627 0 dispersed
Car11g00236 Car-Chr11:1328627 Car11g00910 Car-Chr11:5772496 1.06E-08 dispersed
Car10g00236 Car-Chr10:1111406 Car11g00236 Car-Chr11:1328627 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00236 - - csv:101215825 851.277