Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00248 ATGGCTTTCGCAACTGCCAAACTATCGGAATTGCCATTGAAGAACTCACTTCCACTGTCCTCTCACTCGCGTACGCTTCTCTCAAACCCGAATTTTTCTTTTCAGATTCCAAGAACATTTTCTTCTCTCAGAACTGCCACTGAGCATAGCGGCAAGAGAAACCCTAAAACATCGCAGAAGTCTGGACCCTCTTCTTCTTCTTCTTCTTGGGTTTCCAGGTGGCCTTCTGGGAGCTCTCGGAATGATCGGAAAGTTGAGAAGAAGGTAGCCGAAACGACACGAGATGATCGAACCGATCGAGCGAAGAATCAGACGGAGTACTTGGATAAGAACAAAGGGCAGAGTTCAATTGAGCGAATTGTTCTTCGCTTACGAAATTTAGGGATAGGATCAGATGATGAGGAGGAGAAGGAGGAGGATGAAGAGGATAATGAATTGGATTCTCTCCAGGCAATGCCGGTGACTGGGAAGGAAAAACTGGGGGATTTACTTCAACGTGAATGGATTCGACCGGATGGCACATTGGATTCGAATAAGGATGGGGAGGATGATATGGTTTTACCATGGGAGAGAGAGGAAGACAGGGAGGAAGAGGTGGAGGGTGGAAGCGGGTTGAAAAGGAGAAAGATGAAGGCTCCGACGTTAGCTGAATTGACAATTGAAGATGAGGAGCTGAGGCGGCTGAGGAGAATGGGGATGTTTATTAAAGAGCGGATTAATATACCGAAAGCGGGGATTACACAGGCAGTGCTGGAGAAGATTCATTTGAAATGGAGGAAGGAGGAGTTGGTGAGGCTTAAGTTCCATGAGGAGCTTGCACATGATATGAAGACAGCCCACGAGATTGTAGAGCGACGAACTGGAGGATTGGTTCTTTGGAGGTCTGGAAGTGTTATGGTAGTTTACCGTGGTAGTAACTATGAAGGGCCATCTAAAATTAAACCCCCTGCAAGGGAGGGGGATGCGGTATTCATCCCAGATGTTTCTTCTGCTGCCACTTCGACAATGAGTGGCAATGTTGCCGTTTCAGCTCCGGAGAAGGCTAAGTTGCCTATTGGGGCTCTAAAGTCTAATGAGGCCATGTCGGAGGAAGAGGCTGAATACAACCAACTAATAGATGGTTTAGGTCCTCGTTTTGTTGAATGGTGGGGCACGGGAGTTCTTCCTATCGATGCCGATCAGCTTCCTCCTACTGTTCCGGGTTACAAAACACCTTTCAGGCTACTCCCAACAGGAATGCGGTCCCGACTGACCAATGCAGAGATGACTCAAATGAGGAAACTTGCAAAATCCCTACCTTGTCATTTTGCCCTTGGGAGAAACAGGAACCATCAGGGCTTGGCAGTTGCTATACTTAAACTTTGGGAAAAGAGCCTAGTAGCTAAAATTGCTGTTAAAAGAGGTATACAGAATACCAATAATAAACTCATGGCTGAGGAGATAAAGAACTTAACAGGAGGTGTGTTACTGTTGAGAAATAAATATTTTATCGTCATATACCGTGGAAAGGATTTTCTCCCGACAAGTGTAGCCACGGCTTTGGCAGAAAGGCAGGAATTAACGAAACACATTCAAGATGTGGAAGAGAAAACTCGAAGTAAAGTGGTCGAAGCAACTTCATCAAGCACTGATGGACAGGCACCTGCAGGTACTTTGGCTGAATTCTATGAGGCTCAGTCCCGATGGGGAAGGGAAATATCTGCAGAAGATCGTGAAAAAATGATTGAAGAAAGCTCCAGAGCAAAAACTGAAAGACTTATCAGACGAATCGAACATAAGCTTGGTGTTGCCCAAGCAAAGAAACTAAGAGCAGAAAAGTTGTTGTCTAAAATTGAAGCGTCCATGATCCTCTCTAGCCCTGATGATGACCAAGAAACAATAACAGAAGAGGAACGGGTCATGTTTCAGAAGGTTGGGTTACGAATGACCGCTTATTTACCTATAGGCATTCGTGGTGTCTTTGATGGTGTTGTTGAAAACATGCATTTACATTGGAAGCATAGGGAACTTGTGAAGTTGATTAGCAAGCAAAAGACACTTGCTTTTGTGGAAGAAACGGCAAGGTTGTTAGCGTATGAGAGTGGCGGAATACTAGTTTCGATAGATAGAGTTCCAAAAGGATATGCCCTTATTTACTATCGAGGAAAGAATTATCGTCGACCCATCGCCTTGAGGCCAAGAAACTTGCTTACAAAGGCAAAAGCATTAAAGCGTTCGGTGGCCATGCAGCGCCATGAGGCTCTCAGTCAGCATATATCTGAACTCGAGAAGAACATAGAGCAAATGAAGAAAGACATTGGCGTCACCGAAGATTCAGAGGACGAGAGGAACTGGTCGTCTCAGGATGGACCTGTCTCAGAGTCTTTCCAAGATGAGGAAGCATCTTTGTCCGCATTTTCGGATGATGAGAATGACGAAGATTGCGAGTACGAAGAGGATGAAGATTTTGATTTTTCCGACTCAGAAGACACTGATGATCCACTGAACTAA 2490 45.22 MAFATAKLSELPLKNSLPLSSHSRTLLSNPNFSFQIPRTFSSLRTATEHSGKRNPKTSQKSGPSSSSSSWVSRWPSGSSRNDRKVEKKVAETTRDDRTDRAKNQTEYLDKNKGQSSIERIVLRLRNLGIGSDDEEEKEEDEEDNELDSLQAMPVTGKEKLGDLLQREWIRPDGTLDSNKDGEDDMVLPWEREEDREEEVEGGSGLKRRKMKAPTLAELTIEDEELRRLRRMGMFIKERINIPKAGITQAVLEKIHLKWRKEELVRLKFHEELAHDMKTAHEIVERRTGGLVLWRSGSVMVVYRGSNYEGPSKIKPPAREGDAVFIPDVSSAATSTMSGNVAVSAPEKAKLPIGALKSNEAMSEEEAEYNQLIDGLGPRFVEWWGTGVLPIDADQLPPTVPGYKTPFRLLPTGMRSRLTNAEMTQMRKLAKSLPCHFALGRNRNHQGLAVAILKLWEKSLVAKIAVKRGIQNTNNKLMAEEIKNLTGGVLLLRNKYFIVIYRGKDFLPTSVATALAERQELTKHIQDVEEKTRSKVVEATSSSTDGQAPAGTLAEFYEAQSRWGREISAEDREKMIEESSRAKTERLIRRIEHKLGVAQAKKLRAEKLLSKIEASMILSSPDDDQETITEEERVMFQKVGLRMTAYLPIGIRGVFDGVVENMHLHWKHRELVKLISKQKTLAFVEETARLLAYESGGILVSIDRVPKGYALIYYRGKNYRRPIALRPRNLLTKAKALKRSVAMQRHEALSQHISELEKNIEQMKKDIGVTEDSEDERNWSSQDGPVSESFQDEEASLSAFSDDENDEDCEYEEDEDFDFSDSEDTDDPLN 829
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1384503 1389020 - Carg09141-RA Car11g00248 156201

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00248 829 MobiDBLite consensus disorder prediction 796 829 - -
Car11g00248 829 MobiDBLite consensus disorder prediction 767 829 - -
Car11g00248 829 MobiDBLite consensus disorder prediction 14 31 - -
Car11g00248 829 MobiDBLite consensus disorder prediction 781 795 - -
Car11g00248 829 MobiDBLite consensus disorder prediction 79 107 - -
Car11g00248 829 MobiDBLite consensus disorder prediction 191 210 - -
Car11g00248 829 ProSiteProfiles CRM domain profile. 218 314 IPR001890 GO:0003723
Car11g00248 829 Pfam CRS1 / YhbY (CRM) domain 221 303 IPR001890 GO:0003723
Car11g00248 829 Pfam CRS1 / YhbY (CRM) domain 628 713 IPR001890 GO:0003723
Car11g00248 829 Pfam CRS1 / YhbY (CRM) domain 417 501 IPR001890 GO:0003723
Car11g00248 829 MobiDBLite consensus disorder prediction 44 113 - -
Car11g00248 829 MobiDBLite consensus disorder prediction 1 31 - -
Car11g00248 829 ProSiteProfiles CRM domain profile. 625 725 IPR001890 GO:0003723
Car11g00248 829 Coils Coil 132 152 - -
Car11g00248 829 Coils Coil 510 530 - -
Car11g00248 829 MobiDBLite consensus disorder prediction 56 78 - -
Car11g00248 829 ProSiteProfiles CRM domain profile. 415 512 IPR001890 GO:0003723
Car11g00248 829 Coils Coil 745 772 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00248 - - - csv:101219948 1336.63
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car10g00218 Car11g00248 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00248 Car-Chr11:1384503 Car14g01599 Car-Chr14:12948266 0 dispersed
Car04g02580 Car-Chr4:20293422 Car11g00248 Car-Chr11:1384503 2.27E-25 transposed
Car05g00412 Car-Chr5:2344881 Car11g00248 Car-Chr11:1384503 4.02E-25 transposed
Car05g01268 Car-Chr5:11783433 Car11g00248 Car-Chr11:1384503 1.31E-06 transposed
Car10g00654 Car-Chr10:3349851 Car11g00248 Car-Chr11:1384503 1.58E-169 transposed
Car14g00571 Car-Chr14:3101736 Car11g00248 Car-Chr11:1384503 1.83E-154 transposed
Car15g00054 Car-Chr15:388020 Car11g00248 Car-Chr11:1384503 1.74E-144 transposed
Car19g00211 Car-Chr19:2041177 Car11g00248 Car-Chr11:1384503 4.10E-25 transposed
Car10g00218 Car-Chr10:1048000 Car11g00248 Car-Chr11:1384503 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g317 . Blo16g00136 . . . Bpe13g00351 . . . . Cma10g00232 Cma11g00271 Car10g00218 Car11g00248 . . Cpe04g01403 . . . . . . . Cla06g01466 Cam06g1619 Cec06g1682 Cco06g1674 Clacu06g1584 Cmu06g1535 Cre06g2346 . . Cone13ag0281 . . . . . . . . . . . . . . Cmo10g00246 Cmo11g00277 . . . . . Cpe18g00760 . . . . . . . . . . . . . . Lsi06g01329 Csa01g00386 Chy02g02360 Cme02g01739
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010794 0 2 2 0 1 0 2 0 1 0 0 1 1 1 1 2 1 1 1 0 1 1 1 1 1 0 1 5 3 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g00248 Car_Chr11 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0