Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00249 ATGAACCCTTTTAGGCTCAACGTTGAAGAGAGTGTTGAGCTTTTGCGGCATGCTGCTTTCGATAAGGCTGTTCTTTTCTGTTTGGTTCCTCTGTTTTTTGTAGGTTGGGTTTTTTCTTTCTCTAATTGGATTCCGCTAGCTATTGCGGTGTGGGCGACTTTACAGTATGGGAGTTTCCAACGTCAGCTACTAGTAGAAGAATTGAACAAAAAATGGAAGCAAATTGTATTGGACACCTCTCCCACTACACCACTGGAGCATTGTGAATGGTTGAATAAGCTGTTGACCCAAATTTGGCCTAATCACATCAACCAAAAACTTTCATTGAAGTTCTCTACTATTGTTGAGAAACGATTAAAGCACCGGAGGTCAAGACTTATTGAAAGAGTAGAAGTATTGGAGTTTTCTCTAGGTTCATGTCCCCCTGGCTTGGGTCTTCGTGGGACACAATGGTCAACATCTGGTAATCAGAGAATCATGCGTTTGGGTTTTGATTGGGACACAAATGAAATGAGTATCATGTTACTTGCCAAATTGGGCATGCCATTTACTGGAACTTGCCGGATTGTTATCAACAGCATTCACTTAAAGGGTGATCTTCTCTTGAGACCAATCTTGGATGGGAGAGCGATTCTGTATTCATTTGTTTATACTCCAGAAGTAAGAATAGGAGTTGCTTTTGGAAGTGGTGGAAGCCAGTCGTTGCCTGCAACAGAGCTACCTGGTGTATCTTCCTGGCTGGTTAAACTTCTAACGGACTTTATAGTAAGAACAATGGTCGAACCTCGACGCCGCTGTTTCCCCTTGCCAGCAGTCGACCTCGGTAAAAAGGCTGTGAGTGGTACAATATATGTGACAGTCATCTCAGCCACTAAGCTTTCCAGGAACAGCTTGAGAGGAAACTCTTCCAGAAAGTCACTGAGTACTTATATGAACAGTCCACCAGAAGAAACCTTAACTGATAAGGAAGACTTGCAGACATTTGTGGAGGTAGAAATTGATGAGCTAAGTAGAAGAACTACAGTAAGATCAGGCTCCAGCCCTGTATGGAATTCAACATTCAATATGATCTTACATGAAGATACAGGAACTCTTCGGTTCAATCTTTATGAGTCTAACCCGAGCCATGTGAAGTATGACTATCTAGCCAGCTGTGAAGTAAAGATGAAGTACGCTGCTGATGATTCCACAACATTTTGGGCTATAGGATCTGACTCTGAAGTAATAGCAAAGCACTCTGAGTTTTGTGGAAAAGAGGTTGAAATGGTTGTCCCATTTGAAGGCATCGATTGTGGGGAGTTAACTCTGAGGCTTATAGTTAAAGAGTGGCAATTTTGTGATGGTTCACATAGCTCGCATAATTTCCTTACATCTCAACAATCGGTTAATGGGTCCTCGAACTTTCCTACAAGGACAGGAAGGAAGATTGGCATTACCATTGTGGAAGGAAAAGATCTTAGTTTGAAGGATAAATCAGGGAAATGTGAGACATATGTAAAACTGGAATATGGGAAGGCTCTCCGGAAAACAAGAACTGCTATGTCTTTGAATCCTAATTGGAATCAAAAGTTCGAGTTTGATGAGATTGGAGGTGGTGAATACCTGAAGATCAAATGCTTTGGTGTGGATATATTCGGAGATGAAAATATGGGCACTGCACGAGTAAATCTGGAAGGAGTTCATGAAGGAATAGCCAGGGATGTATGGATCCCCCTAGAAAAAGTAAATTCTGGAGAACTAAGGCTTCTGATAGAGGCAGTGAAGTTGGATGAGTATGAAGGATCGAGGGGTTCAAACACTATCTCCAGTAATGGTTGGATTGAACTTGGTATCATAGAAGCTAAAGACTTGGTGGCTGCTGATATTGGAGGAACAAGCGATCCTTATGTGAGAGTGCAATATGGAATCTTGAAGAAACGAACTAAGGTTATTTTCAAAACTTTAAATCCTCATTGGAACCAGACCTTAGAGTTCCCTGATGATGGAAGTCCTTTGCTGTTGCATGTGAAAGACCACAATGCTTTGCTACCCACATCGAGCATAGGCGACTGTGTAGTGGAGTATCAAAGACTGCCTCCAAACCAAATGGCCGACAAATGGATACCTCTTCAAGGGGTGAAAAGGGGAGAGATCCATATCCAAATCACAAGAAAAGTCCCTGATCTAGAGAAAGACAAAAGATGCAGTTTAGATTCTGAATCATCTTTTACCAAGGCACATCAAGTTTCAACTCAGATGAAGCAAACAATCGGCAAGTTTCAGACTTTGATCGAGGATGTTAATCTCGATGAGGTTTCGGCGTGCTTGAGCGAACTAGAAAGCCTGGAGGAAGTGCAAGAGGAATACATACAACAGCTTGAAACAGAACAAAGGCTTCTGATAAATAAGATGAAGGAGCTTGGCCAGGAAATTCTTAATTCTTATTCACTTAGTAGGAGATGTTCTTGA 2448 41.79 MNPFRLNVEESVELLRHAAFDKAVLFCLVPLFFVGWVFSFSNWIPLAIAVWATLQYGSFQRQLLVEELNKKWKQIVLDTSPTTPLEHCEWLNKLLTQIWPNHINQKLSLKFSTIVEKRLKHRRSRLIERVEVLEFSLGSCPPGLGLRGTQWSTSGNQRIMRLGFDWDTNEMSIMLLAKLGMPFTGTCRIVINSIHLKGDLLLRPILDGRAILYSFVYTPEVRIGVAFGSGGSQSLPATELPGVSSWLVKLLTDFIVRTMVEPRRRCFPLPAVDLGKKAVSGTIYVTVISATKLSRNSLRGNSSRKSLSTYMNSPPEETLTDKEDLQTFVEVEIDELSRRTTVRSGSSPVWNSTFNMILHEDTGTLRFNLYESNPSHVKYDYLASCEVKMKYAADDSTTFWAIGSDSEVIAKHSEFCGKEVEMVVPFEGIDCGELTLRLIVKEWQFCDGSHSSHNFLTSQQSVNGSSNFPTRTGRKIGITIVEGKDLSLKDKSGKCETYVKLEYGKALRKTRTAMSLNPNWNQKFEFDEIGGGEYLKIKCFGVDIFGDENMGTARVNLEGVHEGIARDVWIPLEKVNSGELRLLIEAVKLDEYEGSRGSNTISSNGWIELGIIEAKDLVAADIGGTSDPYVRVQYGILKKRTKVIFKTLNPHWNQTLEFPDDGSPLLLHVKDHNALLPTSSIGDCVVEYQRLPPNQMADKWIPLQGVKRGEIHIQITRKVPDLEKDKRCSLDSESSFTKAHQVSTQMKQTIGKFQTLIEDVNLDEVSACLSELESLEEVQEEYIQQLETEQRLLINKMKELGQEILNSYSLSRRCS 815
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1389566 1394471 - Carg09140-RA Car11g00249 156202

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00249 815 ProSiteProfiles C2 domain profile. 456 570 IPR000008 -
Car11g00249 815 ProSiteProfiles C2 domain profile. 588 701 IPR000008 -
Car11g00249 815 Coils Coil 769 803 - -
Car11g00249 815 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 84 270 IPR031468 GO:0008289
Car11g00249 815 ProSiteProfiles C2 domain profile. 264 401 IPR000008 -
Car11g00249 815 Pfam C2 domain 607 703 IPR000008 -
Car11g00249 815 Pfam C2 domain 281 390 IPR000008 -
Car11g00249 815 Pfam C2 domain 476 572 IPR000008 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00249 - - - csv:101204113 1402.5
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car11g00249 Car18g00036 CCT
Car11g00249 Car13g00859 CCT
Car11g00249 Car18g00036 ECH
Car11g00249 Car13g00859 ECH
Car10g00217 Car11g00249 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00249 Car-Chr11:1389566 Car09g00389 Car-Chr9:2145335 6.76E-08 dispersed
Car10g00217 Car-Chr10:1041832 Car11g00249 Car-Chr11:1389566 0 wgd
Car11g00249 Car-Chr11:1389566 Car13g00859 Car-Chr13:9140461 0 wgd
Car11g00249 Car-Chr11:1389566 Car18g00036 Car-Chr18:154739 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g316 Blo04g00823 . Bda06g00806 . . . . . Cmo13g01065 Cmo18g00035 . Cma11g00273 Car10g00217 Car11g00249 . Cpe20g00121 . . . . . . . . . . . . . . . . . Cone13ag0280 . Lsi02g00181 Csa01g00664 Chy12g01439 Cme12g01877 . Blo15g00070 . Bda14g00929 . Bpe15g00523 Bma03g00894 . Sed08g2181 Cmo10g00245 Cmo11g00278 Cma13g01024 Cma18g00042 Car13g00859 Car18g00036 Cpe09g01138 . Bhi08g01232 Tan05g2269 Cmetu12g1130 Lac10g0236 Hepe07g2393 . . Cla04g01093 Cam04g1144 Cec01g1654 Cco01g1703 Clacu04g1172 Cmu04g1153 Cre01g1448 . Csa01g00387 . Cme02g01738
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002821 1 3 2 1 1 1 4 1 2 1 1 2 3 2 2 3 2 1 2 1 2 2 2 2 2 1 2 3 2 2 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g00249 Car_Chr11 FPKM 4.737911 4.559334 0.583717 0.578171 13.363134 15.190797 13.167287 0.0 0.0 0.0