Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car11g00253 | ATGGATCCTGAGTTGCAGTCCTTCAAGCCATCCTTCTCCTTCCCTGACTTCACGGATCCCAATTTTGAGCTAATGGCTCACTATTCCGCTTCCAACCCAGCTGTTTTAGACAACCCATCTCTGAATTTCACCAACCTCTTGCCTTTCTCAAACGACATGTTCATCCCTCACCACCATCCCCCACCAGAATTCCCACAGAATTTAGGAGACTGTAACAGCTTCCAAATTATGCAGCAAGACCCTCCGGATCCCCCAGCTTGCGCTGAATTTCATGAGATGAAGAAGAGAAGACCCATGGATGTTTCAGAGAGCAGCTCTGAAATTTCAACTTCTGAAACAGGGTTGTTCAACGCCAAAAATAGGTCAGGGAAAGGAAAGAGATTGAAAAGCATAGAGAAAGAAGAAGAGAAATCAAGAAGAGAAGTGGTGCATGTGAGAGCTAGAAGAGGGCAAGCCACTGATAGCCACAGCTTAGCTGAAAGGGTGAGACGAGGCAAAATCAATGAAAGACTAAGATGCTTGAAAGACATTGTCCCAGGATGCTACAAGACCATGGGCATGGCAGTCATGTTGGATGAGATAATCAACTATGTCCAGTCTCTGCAGAATCAAGTAGAGTTCTTATCCATGAAATTAGCTGCAGCTAGCTCGTTCAACGACTTCAACTCGAAGGCCGACGCCCTATCGAAATTACAGGCAAGAGCACATGAAGCAAGAGAATTGGAGAGATTGATGAGAGAAGGATATGGAGGAGTAGCTTGCTTCCACTCAACTTTGCCTCTTTGA | 786 | 45.55 | MDPELQSFKPSFSFPDFTDPNFELMAHYSASNPAVLDNPSLNFTNLLPFSNDMFIPHHHPPPEFPQNLGDCNSFQIMQQDPPDPPACAEFHEMKKRRPMDVSESSSEISTSETGLFNAKNRSGKGKRLKSIEKEEEKSRREVVHVRARRGQATDSHSLAERVRRGKINERLRCLKDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLAAASSFNDFNSKADALSKLQARAHEARELERLMREGYGGVACFHSTLPL | 261 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1404661 | 1406019 | - | Carg09136-RA | Car11g00253 | 156206 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car11g00253 | 261 | MobiDBLite | consensus disorder prediction | 98 | 157 | - | - | |
Car11g00253 | 261 | Pfam | Helix-loop-helix DNA-binding domain | 155 | 202 | IPR011598 | GO:0046983 | |
Car11g00253 | 261 | MobiDBLite | consensus disorder prediction | 103 | 118 | - | - | |
Car11g00253 | 261 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 151 | 201 | IPR011598 | GO:0046983 | |
Car11g00253 | 261 | MobiDBLite | consensus disorder prediction | 125 | 157 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Car11g00253 | Car13g00858 | CCT | |
Car11g00253 | Car18g00037 | CCT | |
Car11g00253 | Car18g00037 | ECH | |
Car11g00253 | Car13g00858 | ECH | |
Car10g00215 | Car11g00253 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car11g00253 | Car-Chr11:1404661 | Car14g00749 | Car-Chr14:4193042 | 5.70E-43 | dispersed | |
Car10g00215 | Car-Chr10:1031717 | Car11g00253 | Car-Chr11:1404661 | 5.89E-90 | wgd | |
Car11g00253 | Car-Chr11:1404661 | Car13g00858 | Car-Chr13:9133842 | 1.39E-72 | wgd | |
Car11g00253 | Car-Chr11:1404661 | Car18g00037 | Car-Chr18:164214 | 3.60E-60 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
4246 | PF00010 | HLH | 4.40E-05 | No_clan | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car11g00253 | - | - | csv:101209353 | 283.878 |