Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00253 ATGGATCCTGAGTTGCAGTCCTTCAAGCCATCCTTCTCCTTCCCTGACTTCACGGATCCCAATTTTGAGCTAATGGCTCACTATTCCGCTTCCAACCCAGCTGTTTTAGACAACCCATCTCTGAATTTCACCAACCTCTTGCCTTTCTCAAACGACATGTTCATCCCTCACCACCATCCCCCACCAGAATTCCCACAGAATTTAGGAGACTGTAACAGCTTCCAAATTATGCAGCAAGACCCTCCGGATCCCCCAGCTTGCGCTGAATTTCATGAGATGAAGAAGAGAAGACCCATGGATGTTTCAGAGAGCAGCTCTGAAATTTCAACTTCTGAAACAGGGTTGTTCAACGCCAAAAATAGGTCAGGGAAAGGAAAGAGATTGAAAAGCATAGAGAAAGAAGAAGAGAAATCAAGAAGAGAAGTGGTGCATGTGAGAGCTAGAAGAGGGCAAGCCACTGATAGCCACAGCTTAGCTGAAAGGGTGAGACGAGGCAAAATCAATGAAAGACTAAGATGCTTGAAAGACATTGTCCCAGGATGCTACAAGACCATGGGCATGGCAGTCATGTTGGATGAGATAATCAACTATGTCCAGTCTCTGCAGAATCAAGTAGAGTTCTTATCCATGAAATTAGCTGCAGCTAGCTCGTTCAACGACTTCAACTCGAAGGCCGACGCCCTATCGAAATTACAGGCAAGAGCACATGAAGCAAGAGAATTGGAGAGATTGATGAGAGAAGGATATGGAGGAGTAGCTTGCTTCCACTCAACTTTGCCTCTTTGA 786 45.55 MDPELQSFKPSFSFPDFTDPNFELMAHYSASNPAVLDNPSLNFTNLLPFSNDMFIPHHHPPPEFPQNLGDCNSFQIMQQDPPDPPACAEFHEMKKRRPMDVSESSSEISTSETGLFNAKNRSGKGKRLKSIEKEEEKSRREVVHVRARRGQATDSHSLAERVRRGKINERLRCLKDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLAAASSFNDFNSKADALSKLQARAHEARELERLMREGYGGVACFHSTLPL 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1404661 1406019 - Carg09136-RA Car11g00253 156206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00253 261 MobiDBLite consensus disorder prediction 98 157 - -
Car11g00253 261 Pfam Helix-loop-helix DNA-binding domain 155 202 IPR011598 GO:0046983
Car11g00253 261 MobiDBLite consensus disorder prediction 103 118 - -
Car11g00253 261 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 151 201 IPR011598 GO:0046983
Car11g00253 261 MobiDBLite consensus disorder prediction 125 157 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car11g00253 Car13g00858 CCT
Car11g00253 Car18g00037 CCT
Car11g00253 Car18g00037 ECH
Car11g00253 Car13g00858 ECH
Car10g00215 Car11g00253 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00253 Car-Chr11:1404661 Car14g00749 Car-Chr14:4193042 5.70E-43 dispersed
Car10g00215 Car-Chr10:1031717 Car11g00253 Car-Chr11:1404661 5.89E-90 wgd
Car11g00253 Car-Chr11:1404661 Car13g00858 Car-Chr13:9133842 1.39E-72 wgd
Car11g00253 Car-Chr11:1404661 Car18g00037 Car-Chr18:164214 3.60E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4246 PF00010 HLH 4.40E-05 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00253 - - csv:101209353 283.878