Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00258 ATGTCTAGTGATAGATATGCACTTTTTCTGATAGATATTCCTTGTATCTTCACTATATTCATTTTCCAGGTATTTCCCTTGCTTATAGAAAAGTTCTCCCTGGAAGAACAGGCATCTCTCGTTTGGCAGTTCTTCTGCAGTATTCCTGTGTACATGATGGCTCAATTTCTGCCTTGGCTTTCATCATCTATTTCACCCGATGAATTTCAGGATCTACAGAAATGCTTAAACAAGGTGGTCCCCGAGGAAAAGCTTCTCCAACAGGTCATATTTACTTGGACGGAAGCGAGAAGTTGTGACTATGCATCAACAAGTTGCTTGGATGATTCTCAAGTTGGATATCATACAGATTCTACTACAAATACATCACATCATCAAATAGAAAATGTAAATTGTGCTTGTGAATCGACCAGCCGTGGGAAAAGAAAATATTTGGAGTCAAGTTCTGATACATCAGATTATGTGGCAACTCATCCGATCAATGAAATACTGTTCTGGCATAATGCCATCAAAAGAGAATTGAATGACATTGCTGAAGAGGCTAGGAAGATACAGCTTTCTGGGAACTTTAGTAATCTATCAACTTTTAACGAGAGGTTGCAATTCATTGCAGAAGTTTGCATTTTTCATAGTATTGCTGAGGACAAGGTAATCTTTCCTGCAGTAGATGGAGAGTTTTCTTTTCTACAGGAACACGCTGAAGAAGAAAGTCAATTCAATGAGTTTAGGAGCCTGATTGAAAAAATTCAAAGTGCAGGGGCTAATTCTACTTCAAGAGCTGAATTTTACGTGAAGTTATGTTCTCATGCTGATCAAATAATGGATACCATTAAGAGGCACTTTCATAATGAAGAAGTTCAGGTTCTTCCACTTGCTAGAAAGCACTTCAGTTTCAAGAGACAACGGGAACTTTTGTATCAAAGCCTGTGCATGATGCCCTTGAAATTGATTGAACGTGTTTTGCCATGGCTGGTAGGATCATTGAAAGAAGATGAAGCTAGAGATCTTCTCGAGAACATGCAGTTGGCAGCTCCAGCTAAAGATACTGCTCTTGTGACTCTCTTTTCTGGTTGGGCTTGCAAGGCCCGTAATAATGGTTCGTGCCTGTCTTCAAGAGCAGTTGGTTGTTGTGCAGTTACAAGGCTCACTGACATTGAAGAAGACATTGTTCAATCCTCTTGTTCTTGTACCCTTGCATTGATTGCAAGGGAAGGTCCAAAGTCAGATCCCGAAACTAATGTTACTGTTAAGAGGCCAGCCATACGCAATAATATTCCTATGCCATGCAAAACTTGTGATGGCCATATTGCTTCGGAGACTGTTAATGTCCAGCAACAGTGTTGTAGGGATCAGTCCTGCCGAGTTCCAGCTTTAGGAGTAAACAGCAAGAATCTGGGGTTAAGTTCTATTTTCACATCCAAGTCTATGCGATCCTTATCTCCCAGCTCTTGTGCACCATCTCTCAATTCCAGCCTTTTTTCATGGGAAACAGATTGTGCGTCTTCTGATGTTGGGTCTGTAGGCCGTCCCATTGATACTATTTTTAAATTTCACAAAGCTATACGCAAAGACCTGGAGTATTTAGACGTGGAATCTGGAAAACTTAGTGATTGTGGTGGAACATTTCTCCGGCAATTTATTGGAAGATTTCGCCTTCTATGGGGGTTATATAGAGCTCATAGTAATGCTGAAGATGATATTGTATTTCCTGCGCTGGAATCCAAAGAGGCATTGCATAACGTAAGTCACTCGTATACACTAGATCATAAGCAGGAGGAAAAATTATTTGAGGACATTTCATGTGTTCTCTCTGAGATTTCATTCCTCCATGAAAGTCTGCATGAGGTTTCGTTGGATGAGAACTTTTCTAGGAGTGATGTTGGCTCTGTTAATGTGGCGGGGAAGGATTGTAATAGAAAGTACAATGAGCTTGCTACAAAGCTTCAAGGAATGTGCAAATCTATAAGAGTTACCCTGGATCAGCATATTTTTAGGGAAGAACTTGAACTTTGGCCGCTGTTTGGGAAACACTTCTCCGTGGAGGAGCAAGACAAAATAGTTGGTCGTATTATTGGGACCACAGGTGCTGAAGTTCTCCAGTCAATGTTGCCATGGGTAACATCTGCACTTACTCAGGATGAACAGAATACTATGATGGATACATGGAAGCAAGCAACGAAAAACACCATGTTCAATGAATGGCTTAATGAATGTTGGAGAGGGACTGCTTCATCTACTCTAAATGGTGCAACATCGGAAGCTAGTGTTGCTGAAAAAGATTCTGGGCTTATTGGGAGCTTGGATCAGAATGATCAAATGTTCAAGCCTGGTTGGAAAGATATTTTTCGCATGAACCAAAATGAACTTGAATCAGAAATCAGAAAGGTTTATCAGGACTCGACTCTTGATCCAAGGAGAAAAGCATATCTCGTGCAGAATCTTATGACCAGTCGCTGGATTGCTGCACAGCAGAAACTACCTCAAGCAAATGTAGAAGATAATTCCAATGGTGAAGATGTAGTGGGACGAACACCATCTTTTCGCTGTGCTGAGAAAAAAGTGTTTGGGTGTGAACATTACAAAAGAAACTGCAAGCTTCTTGCTGCTTGCTGTGGAAAGTTGTTTACTTGTCGATTCTGTCATGACAATGTCAGCGATCACTCAATGGACAGAAAAGCAACATCAGAGATGATGTGCATGAACTGTCTAACAATTCAACCGGTTGGGCCAATATGCACAACACCTTCTTGCAATGGATTATCAATGGCAAAATACTATTGCAATATTTGCAAATTTTTTGATGATGAAAGGGCTGTGTATCATTGCCCATTTTGTAACTTGTGCCGTGTTGGGAAGGGTCTTGGAATTGATTTCTTCCATTGCATGATTTGCAATTGCTGCCTTGGTATAAAGCTGGAGAACCACAAGTGCCTGGAGAAAAGTTTAGAGACCAATTGTCCCATCTGTTGTGACTTCTTATTTACATCCAGTGCAACAGTCAGACCGCTACCCTGTGGTCATTACATGCATTCAGCATGCTTTCAGGCATACACATGCAGCCATTATACCTGTCCTATTTGCAGCAAGTCCTTGGGAGATATGGCGGTTTATTTCGGCATGCTTGACGCCCTGTTGGCTACTGAGGAGCTGCCAGAAGAGTACAGGGATCGTTGCCAGGACATATTGTGCAATGACTGTGAGCGGAAAGGCGCATCAAGGTTTCATTGGTTATATCATAAATGTGGGTATTGTGGATCATACAACACCCGGGTAATCAAGAACGATGCATATGCGGGCTGCCCCTCTTCCAACCAATGA 3318 41.47 MSSDRYALFLIDIPCIFTIFIFQVFPLLIEKFSLEEQASLVWQFFCSIPVYMMAQFLPWLSSSISPDEFQDLQKCLNKVVPEEKLLQQVIFTWTEARSCDYASTSCLDDSQVGYHTDSTTNTSHHQIENVNCACESTSRGKRKYLESSSDTSDYVATHPINEILFWHNAIKRELNDIAEEARKIQLSGNFSNLSTFNERLQFIAEVCIFHSIAEDKVIFPAVDGEFSFLQEHAEEESQFNEFRSLIEKIQSAGANSTSRAEFYVKLCSHADQIMDTIKRHFHNEEVQVLPLARKHFSFKRQRELLYQSLCMMPLKLIERVLPWLVGSLKEDEARDLLENMQLAAPAKDTALVTLFSGWACKARNNGSCLSSRAVGCCAVTRLTDIEEDIVQSSCSCTLALIAREGPKSDPETNVTVKRPAIRNNIPMPCKTCDGHIASETVNVQQQCCRDQSCRVPALGVNSKNLGLSSIFTSKSMRSLSPSSCAPSLNSSLFSWETDCASSDVGSVGRPIDTIFKFHKAIRKDLEYLDVESGKLSDCGGTFLRQFIGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYTLDHKQEEKLFEDISCVLSEISFLHESLHEVSLDENFSRSDVGSVNVAGKDCNRKYNELATKLQGMCKSIRVTLDQHIFREELELWPLFGKHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNTMMDTWKQATKNTMFNEWLNECWRGTASSTLNGATSEASVAEKDSGLIGSLDQNDQMFKPGWKDIFRMNQNELESEIRKVYQDSTLDPRRKAYLVQNLMTSRWIAAQQKLPQANVEDNSNGEDVVGRTPSFRCAEKKVFGCEHYKRNCKLLAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMNCLTIQPVGPICTTPSCNGLSMAKYYCNICKFFDDERAVYHCPFCNLCRVGKGLGIDFFHCMICNCCLGIKLENHKCLEKSLETNCPICCDFLFTSSATVRPLPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLATEELPEEYRDRCQDILCNDCERKGASRFHWLYHKCGYCGSYNTRVIKNDAYAGCPSSNQ 1105
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1423895 1431529 - Carg09131-RA Car11g00258 156211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00258 1105 ProSiteProfiles Zinc finger RING-type profile. 986 1028 IPR001841 -
Car11g00258 1105 Pfam Ring finger domain 985 1027 IPR001841 -
Car11g00258 1105 ProSiteProfiles Zinc finger CTCHY-type profile. 922 985 IPR017921 -
Car11g00258 1105 Pfam Hemerythrin HHE cation binding domain 158 292 IPR012312 -
Car11g00258 1105 Pfam Hemerythrin HHE cation binding domain 510 673 IPR012312 -
Car11g00258 1105 ProSiteProfiles Zinc finger CHY-type profile. 850 919 IPR008913 GO:0008270
Car11g00258 1105 Pfam CHY zinc finger 857 932 IPR008913 GO:0008270
Car11g00258 1105 Pfam Zinc-ribbon 1033 1090 IPR039512 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car10g00290 Car11g00258 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00161 Car-Chr10:767033 Car11g00258 Car-Chr11:1423895 1.07E-14 dispersed
Car11g00258 Car-Chr11:1423895 Car20g00463 Car-Chr20:2582269 6.25E-53 dispersed
Car11g00258 Car-Chr11:1423895 Car11g00259 Car-Chr11:1431845 2.33E-08 tandem
Car10g00290 Car-Chr10:1392582 Car11g00258 Car-Chr11:1423895 3.19E-19 wgd
Car11g00258 Car-Chr11:1423895 Car04g01550 Car-Chr4:9003448 1.05E-17 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00258 K16276 - csv:101215023 2045.4