Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00270 ATGGCAAAGGGAAAAATTGTGTCTGAGAAGATTAAGCTCATTCTTGCCTTGATTGCTCTGCAATTCTGCTATGCAGGATTTCACATTGTGTCAAGAGTTGCTTTGAACATTGGTGTTAGTAAAGTCGTGTATCCGGTGTATCGAAACGCGATTGCTTTAGCTCTGTTGAGTCCTTTTGCTTATTTCCTTGAGAAGAATGAAAGGCCTCCTCTTACTTTTTCTTTGCTGTTTCAGTTCTTTCTTCTAGCTTTACTTGGAATCACTGCCAATCAAGGATTTTACCTCTTGGGGCTAAACTATGCATCTCCAACTTTTGCTTCTGCAATGCAAAACTCTGTTCCTGCTATTACCTTTGTGATGGCTTCTGTTCTAAGGCTTGAGCAAATCAACTTCAGAAGGAGAGATGGGTTGGCAAAGCTTTTGGGAACTATTGGGAGTGTTGGAGGAGCAACTGTGATCACTCTCTATAGAGGCCCTCCACTTTTTCACAACTTACTAACTCAAGGAAGTAGCATCTTGGGGATGGATGAACCTACACTTAAAGTGCAGAACTGGAGATGGGGCTGCATATACCTGCTAGGCCACTGCCTATCTTGGGCTGGTTGGATGGTTTTTCAGGCTTCTGTGTTGAAAAAATATCCAGCAAAGCTGACAATAACTTCATACACATGCTTCTTTGGACTGATCCAATTCCTAGTCATTGCTGGCTTTGTGGAAACAGACTATCAGTACTGGAAAATCCAATCTGCAGAAGAACTCTTCACAATCTTATACGCTGGTGTTGTAGCCTCTGGCATTGTCATATCTCTCCAAACATGGTGCATTCAAAACAGTGATCCTGTCTTTGTTGCTGTCTTCCAGCCTCTCCAAACTTTCCTCGTAGCCATCATGGCGTTTCTCATCCTCGGCGATCGGTTATTCTCCGGCGGGTAA 933 43.3 MAKGKIVSEKIKLILALIALQFCYAGFHIVSRVALNIGVSKVVYPVYRNAIALALLSPFAYFLEKNERPPLTFSLLFQFFLLALLGITANQGFYLLGLNYASPTFASAMQNSVPAITFVMASVLRLEQINFRRRDGLAKLLGTIGSVGGATVITLYRGPPLFHNLLTQGSSILGMDEPTLKVQNWRWGCIYLLGHCLSWAGWMVFQASVLKKYPAKLTITSYTCFFGLIQFLVIAGFVETDYQYWKIQSAEELFTILYAGVVASGIVISLQTWCIQNSDPVFVAVFQPLQTFLVAIMAFLILGDRLFSGG 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1484703 1487130 + Carg09119-RA Car11g00270 156223

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00270 310 Pfam EamA-like transporter family 187 306 IPR000620 GO:0016020|GO:0016021
Car11g00270 310 Pfam EamA-like transporter family 14 153 IPR000620 GO:0016020|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00270 - - - cmos:111433746 591.652
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00111 Car-Chr9:551336 Car11g00270 Car-Chr11:1484703 3.99E-47 dispersed
Car11g00270 Car-Chr11:1484703 Car12g00412 Car-Chr12:2632584 1.14E-131 dispersed
Car11g00270 Car-Chr11:1484703 Car05g00227 Car-Chr5:1189261 9.82E-133 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g263 . . . . . . . . . . . Cma11g00295 . Car11g00270 Sed08g0381 . Cpe04g01387 Bhi02g00110 Tan09g1858 Cmetu05g0415 . Hepe09g0368 . . Cla06g01441 Cam06g1595 Cec06g1656 Cco06g1649 Clacu06g1558 Cmu06g1512 Cre06g2320 . . . . . . . . . . . . . . . . . . Cmo11g00300 . . . . . . . . . . . . . . . . . . . . Lsi06g01306 Csa01g00409 Chy02g02335 Cme02g01709
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car04g00565 . 1 754 Nodulin-like Gene Family AT4G19180 61.1 1.3e-252 869.8
Car16g00450 . 1 761 Nodulin-like Gene Family AT4G19180 60.2 1.4e-246 849.7
Car09g00674 . 24 232 Nodulin-like Gene Family AT3G45870 67.5 1.0e-74 277.3
Car15g00306 CST 292 633 Nodulin-like Gene Family AT3G28050 56.2 1.0e-106 384.0
Car02g01299 . 8 362 Nodulin-like Gene Family AT5G47470 57.4 1.3e-104 377.1
Car06g00703 . 2 356 Nodulin-like Gene Family AT5G47470 55.3 1.1e-98 357.5
Car15g00306 CST 291 595 Nodulin-like Gene Family AT5G40230 51.2 3.6e-83 305.8
Car15g00306 CST 292 595 Nodulin-like Gene Family AT5G40240 50.8 6.8e-82 301.6
Car05g00227 CCT,ECH 16 280 Nodulin-like Gene Family AT3G53210 58.5 5.6e-86 314.7
Car12g00412 CCT,ECH 16 280 Nodulin-like Gene Family AT3G53210 57.4 1.4e-84 310.1
Car09g00111 . 17 134 Nodulin-like Gene Family AT3G53210 66.9 2.3e-39 159.8
Car07g00952 . 99 333 Nodulin-like Gene Family AT2G37450 65.5 1.3e-82 303.5
Car04g01101 . 98 335 Nodulin-like Gene Family AT2G37450 55.9 1.5e-67 253.4
Car09g00716 . 104 345 Nodulin-like Gene Family AT2G37450 52.7 3.5e-64 242.3
Car04g01163 . 82 322 Nodulin-like Gene Family AT2G37450 51.2 6.7e-63 238.0
Car07g00952 . 12 333 Nodulin-like Gene Family AT2G37460 69.9 1.5e-124 443.4
Car04g01101 . 11 335 Nodulin-like Gene Family AT2G37460 59.4 2.3e-101 366.3
Car09g00716 . 16 345 Nodulin-like Gene Family AT2G37460 53.5 2.3e-96 349.7
Car04g01163 . 1 322 Nodulin-like Gene Family AT2G37460 53.2 2.2e-91 333.2
Car03g00997 . 13 339 Nodulin-like Gene Family AT2G37460 51.6 2.3e-88 323.2
Car14g00458 . 12 341 Nodulin-like Gene Family AT2G37460 50.2 3.7e-83 305.8
Car05g00227 CCT,ECH 1 393 Nodulin-like Gene Family AT1G75500 73.0 4.6e-161 564.7
Car12g00412 CCT,ECH 1 393 Nodulin-like Gene Family AT1G75500 71.8 1.6e-158 556.2
Car11g00270 . 7 310 Nodulin-like Gene Family AT1G75500 61.8 3.4e-108 389.0
Car09g00111 . 4 135 Nodulin-like Gene Family AT1G75500 80.3 7.0e-53 205.3
Car09g00112 . 1 99 Nodulin-like Gene Family AT1G75500 71.6 1.1e-37 154.8
Car07g00952 . 12 336 Nodulin-like Gene Family AT5G13670 52.3 1.1e-90 330.9
Car04g01101 . 8 336 Nodulin-like Gene Family AT2G39510 62.9 2.6e-113 406.0
Car07g00952 . 13 347 Nodulin-like Gene Family AT2G39510 60.0 9.9e-113 404.1
Car09g00716 . 18 355 Nodulin-like Gene Family AT2G39510 55.5 1.5e-100 363.6
Car04g01163 . 1 342 Nodulin-like Gene Family AT2G39510 54.5 1.5e-97 353.6
Car03g00997 . 16 319 Nodulin-like Gene Family AT2G39510 50.6 7.9e-86 314.7
Car09g00716 . 14 265 Nodulin-like Gene Family AT4G08290 55.1 1.8e-74 276.6
Car04g01163 . 1 242 Nodulin-like Gene Family AT4G08290 53.3 1.3e-69 260.4
Car04g02281 . 29 181 Nodulin-like Gene Family AT4G08290 60.0 5.3e-42 168.7
Car09g00716 . 12 356 Nodulin-like Gene Family AT4G08300 67.4 2.7e-126 449.1
Car04g01163 . 2 333 Nodulin-like Gene Family AT4G08300 67.8 4.7e-123 438.3
Car20g00937 . 10 260 Nodulin-like Gene Family AT5G64700 61.3 4.7e-77 285.0
Car20g00895 . 10 251 Nodulin-like Gene Family AT5G64700 55.9 2.0e-67 253.1
Car20g00939 . 10 243 Nodulin-like Gene Family AT5G64700 51.5 9.0e-60 227.6
Car02g00409 . 2 200 Nodulin-like Gene Family AT5G64700 58.6 4.2e-57 218.8
Car05g00607 . 1 334 Nodulin-like Gene Family AT4G30420 55.4 8.9e-101 364.4
Car12g00738 . 1 370 Nodulin-like Gene Family AT4G30420 51.9 1.7e-96 350.1
Car12g00739 . 1 336 Nodulin-like Gene Family AT4G30420 50.3 2.7e-89 326.2
Car04g01385 . 8 311 Nodulin-like Gene Family AT5G07050 72.7 2.6e-127 452.6
Car14g00458 . 10 337 Nodulin-like Gene Family AT5G07050 64.7 1.7e-118 423.3
Car03g00997 . 6 334 Nodulin-like Gene Family AT5G07050 62.2 7.1e-117 417.9
Car06g00011 CST 10 268 Nodulin-like Gene Family AT5G07050 66.2 2.0e-95 346.7
Car09g00716 . 18 338 Nodulin-like Gene Family AT5G07050 53.4 1.3e-94 344.0
Car04g01163 . 1 315 Nodulin-like Gene Family AT5G07050 52.3 1.1e-90 330.9
Car07g00952 . 11 333 Nodulin-like Gene Family AT5G07050 51.2 3.3e-90 329.3
Car14g00456 CST 1 270 Nodulin-like Gene Family AT5G07050 60.1 4.8e-89 325.5
Car03g00997 . 13 337 Nodulin-like Gene Family AT3G56620 57.4 3.0e-101 365.9
Car14g00458 . 12 357 Nodulin-like Gene Family AT3G56620 51.4 5.9e-97 351.7
Car04g01385 . 10 311 Nodulin-like Gene Family AT3G56620 57.0 7.7e-89 324.7
Car06g00011 CST 12 268 Nodulin-like Gene Family AT3G56620 56.8 3.2e-79 292.7
Car14g00456 CST 12 270 Nodulin-like Gene Family AT3G56620 54.4 7.5e-76 281.6
Car05g00933 CCT,ECH 2 337 Nodulin-like Gene Family AT1G09380 57.7 5.3e-114 408.3
Car11g01024 . 5 311 Nodulin-like Gene Family AT1G09380 59.8 6.4e-104 374.8
Car11g01025 CCT,ECH 5 353 Nodulin-like Gene Family AT1G09380 54.7 3.1e-98 355.9
Car14g00458 . 12 353 Nodulin-like Gene Family AT2G40900 56.1 8.0e-105 377.9
Car03g00997 . 13 332 Nodulin-like Gene Family AT2G40900 60.2 2.3e-104 376.3
Car04g01385 . 4 311 Nodulin-like Gene Family AT2G40900 55.8 8.6e-91 331.3
Car06g00011 CST 12 268 Nodulin-like Gene Family AT2G40900 58.0 2.3e-80 296.6
Car14g00456 CST 12 270 Nodulin-like Gene Family AT2G40900 55.6 1.4e-77 287.3
Car11g00270 . 1 310 Nodulin-like Gene Family AT3G18200 72.3 2.5e-119 426.0
Car05g00227 CCT,ECH 16 358 Nodulin-like Gene Family AT3G18200 57.1 2.9e-107 386.0
Car12g00412 CCT,ECH 16 358 Nodulin-like Gene Family AT3G18200 56.9 8.3e-107 384.4
Car09g00111 . 17 135 Nodulin-like Gene Family AT3G18200 66.4 2.0e-39 160.6
Car09g00716 . 12 356 Nodulin-like Gene Family AT1G44800 65.5 1.1e-124 443.7
Car04g01163 . 2 333 Nodulin-like Gene Family AT1G44800 65.1 1.1e-119 427.2
Car07g00952 . 13 333 Nodulin-like Gene Family AT1G44800 50.3 4.6e-86 315.5
Car09g00675 . 1 147 Nodulin-like Gene Family AT5G45370 65.6 1.5e-49 193.7
Car09g00674 . 108 232 Nodulin-like Gene Family AT5G45370 74.4 9.2e-47 184.5
Car09g00716 . 12 315 Nodulin-like Gene Family AT1G21890 66.3 7.6e-115 411.0
Car04g01163 . 1 292 Nodulin-like Gene Family AT1G21890 64.8 3.6e-109 392.1
Car07g00952 . 11 314 Nodulin-like Gene Family AT1G21890 50.3 3.2e-81 299.3
Car14g01199 . 1 566 Nodulin-like Gene Family AT1G80530 59.9 6.3e-188 654.4
Car01g00144 . 1 566 Nodulin-like Gene Family AT1G80530 56.1 7.5e-173 604.4
Car08g00864 . 22 420 Nodulin-like Gene Family AT4G19450 54.5 7.8e-119 424.5
Car16g00464 . 1 379 Nodulin-like Gene Family AT4G19450 56.8 2.6e-114 409.5
Car11g00131 CST 7 538 Nodulin-like Gene Family AT1G74780 59.3 1.5e-178 623.2
Car10g00160 CST 45 562 Nodulin-like Gene Family AT1G74780 56.3 7.4e-162 567.8
Car07g00642 . 2 538 Nodulin-like Gene Family AT4G34950 68.9 3.0e-214 741.9
Car20g00663 . 9 542 Nodulin-like Gene Family AT4G34950 68.1 8.8e-214 740.3
Car16g00615 . 15 465 Nodulin-like Gene Family AT4G34950 58.0 5.4e-163 571.6
Car04g02866 CST 6 591 Nodulin-like Gene Family AT5G14120 70.7 2.6e-237 818.5
Car15g00079 CST 6 582 Nodulin-like Gene Family AT5G14120 68.2 7.9e-226 780.4
Car07g00642 . 1 388 Nodulin-like Gene Family AT2G16660 73.1 3.2e-146 515.4
Car20g00663 . 1 388 Nodulin-like Gene Family AT2G16660 67.3 1.3e-144 510.0
Car16g00615 . 15 364 Nodulin-like Gene Family AT2G16660 63.5 4.5e-124 441.8
Car04g02866 CST 6 429 Nodulin-like Gene Family AT3G01930 70.3 7.9e-170 594.0
Car15g00079 CST 6 429 Nodulin-like Gene Family AT3G01930 68.5 1.2e-165 580.1
Car11g00131 CST 7 541 Nodulin-like Gene Family AT1G18940 54.4 2.4e-165 579.3
Car10g00160 CST 41 562 Nodulin-like Gene Family AT1G18940 52.4 4.6e-156 548.5
Car11g00131 CST 6 539 Nodulin-like Gene Family AT2G34350 56.9 1.6e-161 566.6
Car10g00160 CST 44 563 Nodulin-like Gene Family AT2G34350 54.6 6.4e-150 528.1
Car08g00864 . 5 568 Nodulin-like Gene Family AT1G31470 54.7 3.0e-156 549.3
Car16g00464 . 1 532 Nodulin-like Gene Family AT1G31470 50.3 2.7e-133 473.0
Car09g00979 . 12 197 Nodulin-like Gene Family AT1G76800 77.4 4.9e-71 264.6
Car15g00555 . 32 222 Nodulin-like Gene Family AT1G76800 72.8 2.3e-68 255.8
Car04g02354 . 20 216 Nodulin-like Gene Family AT1G76800 70.6 4.8e-66 248.1
Car19g00252 . 10 201 Nodulin-like Gene Family AT1G76800 60.9 1.3e-58 223.4
Car19g00252 . 9 201 Nodulin-like Gene Family AT3G25190 66.8 1.5e-63 240.0
Car04g02354 . 20 216 Nodulin-like Gene Family AT3G25190 64.0 4.4e-60 228.4
Car15g00555 . 37 225 Nodulin-like Gene Family AT3G25190 65.1 2.8e-59 225.7
Car09g00979 . 19 197 Nodulin-like Gene Family AT3G25190 62.6 2.2e-56 216.1
Car09g00979 . 14 197 Nodulin-like Gene Family AT1G21140 75.5 7.8e-72 267.3
Car15g00555 . 18 225 Nodulin-like Gene Family AT1G21140 71.2 2.3e-71 265.8
Car04g02354 . 4 216 Nodulin-like Gene Family AT1G21140 70.4 5.0e-71 264.6
Car19g00252 . 7 201 Nodulin-like Gene Family AT1G21140 61.0 1.5e-62 236.5
Car15g00555 . 21 225 Nodulin-like Gene Family AT3G43630 74.1 1.2e-72 270.0
Car09g00979 . 1 194 Nodulin-like Gene Family AT3G43630 73.3 4.6e-72 268.1
Car04g02354 . 7 212 Nodulin-like Gene Family AT3G43630 73.8 5.0e-71 264.6
Car19g00252 . 7 198 Nodulin-like Gene Family AT3G43630 61.5 8.9e-60 227.3
Car04g02354 . 7 216 Nodulin-like Gene Family AT3G43660 72.9 3.5e-72 268.5
Car09g00979 . 10 197 Nodulin-like Gene Family AT3G43660 74.5 7.7e-72 267.3
Car15g00555 . 15 222 Nodulin-like Gene Family AT3G43660 72.1 2.5e-70 262.3
Car19g00252 . 7 201 Nodulin-like Gene Family AT3G43660 62.1 8.5e-63 237.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013761 0 1 0 0 0 0 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g00270 Car_Chr11 FPKM 2.770761 2.652635 0.0 0.0 0.0 0.0 0.0 0.0 0.125179 0.0