Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00272 ATGGCTGAGCTCGATCCATCAAAGAAAGTGGCTGACAGATATTTAAAGCGTGAGGTTCTCGGAGAGGGTACCTATGGTGTTGTATATAAGGCCATTGATACCCAGACAGGTCAGACGGTTGCAATCAAGAAAATTCGGCTTGGCAAACAAAAAGAGGGAGTAAATTTTACGGCTCTTCGAGAAATCAAGCTGCTTAAAGAGCTCAAAGATTCAAACATAATTGAGTTAATTGATGCATTCCCTCATAAAGAAAATTTGCATCTTGTTTTTGAATTTATGGAGACGGACCTTGAAGCTGTTATACGTGATCGAAATATATTTCTTTCCCCAGCTGACATAAAATCATACCTTCAGATGACGTTGAAAGGCCTTGCTTTTTGCCACAAGAAGTGGGTTTTACATAGGGATATGAAGCCAAATAATTTGTTGATAGGACCGAATGGTCAACTGAAACTTGCAGATTTTGGTTTGGCTAGGATATTTGGGAGTCCTGATCGTAGATATACTCACCAGGTGTTTGCCCGATGGTACAGAGCACCTGAGCTATTGTTTGGCTCTAAGCAGTATGGTTCTGCAGTGGATGTTTGGGCAGCAGCTTGTATTTTTGCTGAACTACTACTTCGTAGACCTTTTCTTCAGGGTTCGAGCGACATTGATCAATTAGGGAAGATCTTTGCAGCTTTTGGAACTCCGACAACTTCTCAGTGGTCTGATATGTTATACCTACCTGATTATGTGGAGTTCCAATATGTTCCTGCACCTCCTCTACGTTCATTGTTTCCTATGGCTAGTGATGACACGCTGGATCTCCTATCAAAGATGTTTGCTTATGATCCAAAGTCTAGAATTTCCATTCAGCAAGCATTGGAGCATAGGTTTCATTTTTTAAATATGAAAATATTATTTAGAAATCAAGAAATGTTTTGGATACATTGCTTACAGTATTTCCTTTCTAGGTACTTCACATCTGCACCACTTCCCACAGATCCTAGTAAGCTTCCAAGGCCTACTTCAAAGCGTGAACCTATGAACCCTAGAGTTTCAGACTTAAATTCAAATGAGGGTCCTACTGTCCTCTCACCTCCAAGAAAGTCAAGAAGAGTAATGCCAGAGCGTGAGGCTTTTGAAGGAAATGCATGTAAAGCTGATAAGCTTGATGACCACGGTAATGAGGTGCGAGAGGCAGCTGCTGGAAATACAAGCAAAAATGAAGCAGTGCCAATGTCGTTGGATTTTTCTATTTTTGGTGGAAAACCTCCAAATAGACCAACAATTAACAGTGCTGACCGATCACATCTTAAAAGGAAATTAGATCTTGAATTCCAGCAATAA 1332 40.47 MAELDPSKKVADRYLKREVLGEGTYGVVYKAIDTQTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDSNIIELIDAFPHKENLHLVFEFMETDLEAVIRDRNIFLSPADIKSYLQMTLKGLAFCHKKWVLHRDMKPNNLLIGPNGQLKLADFGLARIFGSPDRRYTHQVFARWYRAPELLFGSKQYGSAVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPTTSQWSDMLYLPDYVEFQYVPAPPLRSLFPMASDDTLDLLSKMFAYDPKSRISIQQALEHRFHFLNMKILFRNQEMFWIHCLQYFLSRYFTSAPLPTDPSKLPRPTSKREPMNPRVSDLNSNEGPTVLSPPRKSRRVMPEREAFEGNACKADKLDDHGNEVREAAAGNTSKNEAVPMSLDFSIFGGKPPNRPTINSADRSHLKRKLDLEFQQ 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1498123 1501978 - Carg09117-RA Car11g00272 156225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00272 443 MobiDBLite consensus disorder prediction 428 443 - -
Car11g00272 443 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car11g00272 443 MobiDBLite consensus disorder prediction 327 369 - -
Car11g00272 443 MobiDBLite consensus disorder prediction 411 443 - -
Car11g00272 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Car11g00272 443 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Car11g00272 443 MobiDBLite consensus disorder prediction 344 359 - -
Car11g00272 443 Pfam Protein kinase domain 16 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car10g00299 Car11g00272 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00272 Car-Chr11:1498123 Car18g00857 Car-Chr18:9596081 2.22E-87 dispersed
Car10g00299 Car-Chr10:1460610 Car11g00272 Car-Chr11:1498123 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89162 PF00069 Pkinase 2.30E-71 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00272 K02202 - csv:101217645 779.63