Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00276 ATGGCGGAAGGGCTCGTTCTCCGGGGAACGATGAGGGCTCACACGGATATGGTCACGGCCATAGCCACTCCGGTTGACAATTCCGATATGATCGTCACCTCTTCCCGTGACAAATCCATCATCTTGTGGCGTCTCACTAAGGAGGAGAAGACCTACGGTGTTCCTCAGCGTAGGCTCAATGGCCACTCCCACTTCGTTCAGGATGTTGTTCTCTCTTCCGACGGTCAGTTCGCTCTCTCTGGTTCCTGGGACGGAGAGCTCCGCCTTTGGGACCTCGCCACGGGCGTTACCTCCCGTCGATTTGTTGGTCATTCGAAGGATGTTCTCTCTGTTGCCTTCTCCATTGACAATCGTCAGATCGTCTCGGCCTCTCGTGACCGAACGATCAAGCTATGGAATACACTCGGTGAGTGCAAGTACACAATCCAGGATGGTGACGCTCACAGTGACTGGGTTAGCTGTGTTAGATTCAGTCCTAACACTCTCTTGCCGACGATTGTTTCGGCGTCTTGGGACAAGACCGTGAAGGTTTGGAATTTGACCAATTGCAAGTTGAGAGTGACTCTTGCTGGTCATGCTGGTTATGTCAACACGGTGGCTGTCTCTCCTGATGGGTCGCTATGCGCCAGTGGAGGCAAAGACGGAGTGATTTTGCTGTGGGATTTGGCCGAGGGTAAGAAGCTCTATTCATTGGATGCCGGATCGATTATTCATGCTCTGTGTTTCAGCCCCAACAGGTACTGGCTCTGTGCTGCGACTGAGAGCAGTATTAAGATCTGGGACTTGGAGAGCAAGAGCATCGTGGAGGACTTGAAAGTCGATTTAAAAACCGAGGCGGAGAAAACTGATGATACCCATGCTGCAACCGCCAACAAGATTAAGGTTATCTACTGCACAAGTTTGAGCTGGAGTGCAGATGGGAGCACATTGTTTAGTGGCTATACAGACGGAGTGATCAGAGTTTGGGGCATTGGTCGCTACTAG 984 51.63 MAEGLVLRGTMRAHTDMVTAIATPVDNSDMIVTSSRDKSIILWRLTKEEKTYGVPQRRLNGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLATGVTSRRFVGHSKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQDGDAHSDWVSCVRFSPNTLLPTIVSASWDKTVKVWNLTNCKLRVTLAGHAGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKKLYSLDAGSIIHALCFSPNRYWLCAATESSIKIWDLESKSIVEDLKVDLKTEAEKTDDTHAATANKIKVIYCTSLSWSADGSTLFSGYTDGVIRVWGIGRY 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1513273 1515367 + Carg09113-RA Car11g00276 156229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00276 327 CDD WD40 7 322 - -
Car11g00276 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 299 327 IPR001680 GO:0005515
Car11g00276 327 PANTHER RECEPTOR FOR ACTIVATED PROTEIN KINASE C RACK1 1 327 IPR045223 GO:0015935|GO:0043022
Car11g00276 327 ProSitePatterns Trp-Asp (WD) repeats signature. 208 222 IPR019775 -
Car11g00276 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 299 327 - -
Car11g00276 327 SUPERFAMILY WD40 repeat-like 5 322 IPR036322 GO:0005515
Car11g00276 327 Pfam WD domain, G-beta repeat 188 221 IPR001680 GO:0005515
Car11g00276 327 Pfam WD domain, G-beta repeat 54 91 IPR001680 GO:0005515
Car11g00276 327 Pfam WD domain, G-beta repeat 299 322 IPR001680 GO:0005515
Car11g00276 327 Pfam WD domain, G-beta repeat 9 43 IPR001680 GO:0005515
Car11g00276 327 Pfam WD domain, G-beta repeat 227 261 IPR001680 GO:0005515
Car11g00276 327 Pfam WD domain, G-beta repeat 98 133 IPR001680 GO:0005515
Car11g00276 327 Pfam WD domain, G-beta repeat 146 179 IPR001680 GO:0005515
Car11g00276 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 11 45 - -
Car11g00276 327 ProSitePatterns Trp-Asp (WD) repeats signature. 166 180 IPR019775 -
Car11g00276 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 59 95 - -
Car11g00276 327 SMART WD40_4 182 221 IPR001680 GO:0005515
Car11g00276 327 SMART WD40_4 224 261 IPR001680 GO:0005515
Car11g00276 327 SMART WD40_4 289 323 IPR001680 GO:0005515
Car11g00276 327 SMART WD40_4 52 91 IPR001680 GO:0005515
Car11g00276 327 SMART WD40_4 94 133 IPR001680 GO:0005515
Car11g00276 327 SMART WD40_4 4 44 IPR001680 GO:0005515
Car11g00276 327 SMART WD40_4 135 179 IPR001680 GO:0005515
Car11g00276 327 ProSitePatterns Trp-Asp (WD) repeats signature. 78 92 IPR019775 -
Car11g00276 327 Gene3D - 4 327 IPR015943 GO:0005515
Car11g00276 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 145 182 - -
Car11g00276 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 101 133 IPR001680 GO:0005515
Car11g00276 327 PANTHER BNAA06G12310D PROTEIN 1 327 - -
Car11g00276 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 145 188 IPR001680 GO:0005515
Car11g00276 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 11 53 IPR001680 GO:0005515
Car11g00276 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 189 230 IPR001680 GO:0005515
Car11g00276 327 PRINTS G protein beta WD-40 repeat signature 120 134 IPR020472 -
Car11g00276 327 PRINTS G protein beta WD-40 repeat signature 166 180 IPR020472 -
Car11g00276 327 PRINTS G protein beta WD-40 repeat signature 208 222 IPR020472 -
Car11g00276 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 189 226 - -
Car11g00276 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 101 133 - -
Car11g00276 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 100 IPR001680 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car10g00301 Car11g00276 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01386 Car-Chr1:12130887 Car11g00276 Car-Chr11:1513273 3.75E-06 dispersed
Car11g00276 Car-Chr11:1513273 Car08g00308 Car-Chr8:1972092 6.02E-11 dispersed
Car18g00475 Car-Chr18:3168650 Car11g00276 Car-Chr11:1513273 2.12E-11 dispersed
Car10g00300 Car-Chr10:1471226 Car11g00276 Car-Chr11:1513273 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00276 K14753 - csv:101216713 656.751