Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00280 ATGCAAGCGCGCGGGAATTGTCGTCTCAGCCTGCTTCGCGGCAGCTCTTCCCGATTGATTCAAACCGAATCCATCATCAACGAGCTTCGAGCCTGTTCAAATCCTTCTCCTTCGAAGAAAACATTGACCCAAAAACGCGAATCCAAAAACACCAACCCCGCAATTACCGACTCCGATATAGTAAAATGGAACAGGAAAATCACCGCCTACATGCGCAGTGGTCAATGCGAGTCCGCTTTAGGCGTTTTCAATGGCATGCCCCGTCGGAGTACTGTCACCTACAACGCAATGATATCGGGTTATTTGAGTAACAACAAGTTCGATCGTGCACGGCAGGTGTTTGAGAAAATGCCCAACAGAGATTTGATATCTTGGAATGTGATGCTTAGTGGGTATGTGAAGAATGGTAATCTTAGTGCGGCTCGGACTTTGTTTAATCAGATGCCTGAGAAGGATGTTGTTTCTTGGAATGCTATGTTGTCGGGGTATGCTCAGAATGGGTATGTGGAGGAGGCTAGGAAATTATTTGATGAAATGTCGGATAAGAATGAGATTTCATGGAATGGGTTGCTGGCGGCGTATATTCAGAATGGGAGGATTGAGGAAGCTAGAAGGTTGTTTGATTCCAAAATGGATTGGGAGATTGTTTCTTGGAATTGTTTGATGGGTGGGTATGTGAGGAAAAAGAGGCTTGATGATGCAAGGATTCTTTTTGACCGTATGCCAGTTAGAGATAATATATCTTGGAACATAATGATTACAGGTTATGCTCAGAATGGGCTGCTGTCAGAAGCTGGGAGATTATTTGAAGAGCTACCAATTAAAGATGTGTTTGCTTGGACGGCCATGGTATCTGGTTATGTGCAGAACGGAATGTTGGATGAAGCAAAGAGAATTTTTGAAGAAATGCCTGAAAAGAATGAAGTTTCATGGAATGCGATGATTGCAGGGTATGTGCAGAACCAGCAAATAGACAAGGCAAGGGAATTGTTTGATCAAATGCCTTCACGGAACATTAGTTCTTGGAATACTATGGTAACTGGGTATGCTCAAAGTGGCAATATTGATCAAGCCAGGATTCTGTTTGATGAGATGCCTCAACGTGACTGTATATCATGGGCAGCTATGATCGCCGGCTATGCCCAAAGCAGCCAGAGTGAAGAGGCCTTGCAACTCTTTATCATGATGAAAAGAAATGGAGAAAGGTTAAATAGATCTGCGTTGGCATGTGCATTGAGCTCGTGTGCAGAGATTGCGGCTTTCGAGTTAGGGAAACAGCTTCATGGACGGCTAATTAAGGCAGGATTCCAAACTGGGTATTATGTGGGAAATGCTCTTTTAGCCATGTATTGCAAATGTGGAAGTATAGAAGAGGCACTTGATATTTTCGAAGATATAACAGATAAGGATATTGTTTCCTGGAACACACTGATTGTAGGTTATGCTAGGCATGGATTTGGTAAAGAGGCTTTAGCTGTTTTTGAGTCAATGAAGATGACAATCAAGCCTGATGAAGTCACGCTGGTATGGAAGTTCTCTAAAACTTCTATAAGTATAATTTGA 1563 42.87 MQARGNCRLSLLRGSSSRLIQTESIINELRACSNPSPSKKTLTQKRESKNTNPAITDSDIVKWNRKITAYMRSGQCESALGVFNGMPRRSTVTYNAMISGYLSNNKFDRARQVFEKMPNRDLISWNVMLSGYVKNGNLSAARTLFNQMPEKDVVSWNAMLSGYAQNGYVEEARKLFDEMSDKNEISWNGLLAAYIQNGRIEEARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARILFDRMPVRDNISWNIMITGYAQNGLLSEAGRLFEELPIKDVFAWTAMVSGYVQNGMLDEAKRIFEEMPEKNEVSWNAMIAGYVQNQQIDKARELFDQMPSRNISSWNTMVTGYAQSGNIDQARILFDEMPQRDCISWAAMIAGYAQSSQSEEALQLFIMMKRNGERLNRSALACALSSCAEIAAFELGKQLHGRLIKAGFQTGYYVGNALLAMYCKCGSIEEALDIFEDITDKDIVSWNTLIVGYARHGFGKEALAVFESMKMTIKPDEVTLVWKFSKTSISII 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1531924 1533486 + Carg09109-RA Car11g00280 156233

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00280 520 MobiDBLite consensus disorder prediction 31 54 - -
Car11g00280 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 276 310 IPR002885 -
Car11g00280 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 338 372 IPR002885 -
Car11g00280 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 275 IPR002885 -
Car11g00280 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 470 500 IPR002885 -
Car11g00280 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 152 186 IPR002885 -
Car11g00280 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 214 244 IPR002885 -
Car11g00280 520 Pfam PPR repeat family 90 121 IPR002885 -
Car11g00280 520 Pfam PPR repeat 279 307 IPR002885 -
Car11g00280 520 Pfam PPR repeat 216 242 IPR002885 -
Car11g00280 520 Pfam PPR repeat 341 370 IPR002885 -
Car11g00280 520 Pfam PPR repeat 444 470 IPR002885 -
Car11g00280 520 Pfam PPR repeat 247 272 IPR002885 -
Car11g00280 520 Pfam PPR repeat 123 152 IPR002885 -
Car11g00280 520 Pfam PPR repeat 472 498 IPR002885 -
Car11g00280 520 Pfam PPR repeat 67 89 IPR002885 -
Car11g00280 520 Pfam PPR repeat 309 339 IPR002885 -
Car11g00280 520 Pfam PPR repeat 185 208 IPR002885 -
Car11g00280 520 Pfam PPR repeat 371 400 IPR002885 -
Car11g00280 520 Pfam PPR repeat 154 183 IPR002885 -
Car11g00280 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 90 124 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00280 - - - csv:101211575 871.692
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00280 Car-Chr11:1531924 Car07g01089 Car-Chr7:6477773 3.70E-88 dispersed
Car11g00280 Car-Chr11:1531924 Car08g00515 Car-Chr8:3257381 2.09E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g225 . . . . . . . . . . . . . Car11g00280 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme02g01692
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008820 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 1 2 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g00280 Car_Chr11 FPKM 30.969696 35.194645 51.196915 48.264534 39.667313 37.78521 40.524536 76.715919 76.70829 77.288467