Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00290 ATGGCGTCCAATTCTGCCAACCTTTGGGTCCTGTTGGGATTGGGTTTGGCTGGAATCCTGTTGATGACGAAAAAGCTTAAGAAAGCCATTAGAGAGGATTTTGGAGCGTTTATAGAGAGGCTTCAGCTACTTCCTCCTCCTCAGCCTGCTCCTCCTAAAGCCCCTCATCCCCTGACCGGTCTCACCTTCGCCGTTTCGGACGTATTTGAAATTGAAGGACATGTGACTGGGTTTGGTCATCCAGACTGGGCAAGAACACATGATGCAGCTTCTCGTACAGCTCCAATAGTTTCTGCACTTGTTGAAGGAGGAGCTACTTGCATCGGAAAAACTGTTGTCAGTGAACTGTCAATGGGCATCAGTGGAGAAAACAAGCATCATGGCACTCCCACTAATCCTGCATCACATTATACTGCTCCTGGTGGGTCGTCCAGTGGAGCTGCTGTTGCAGTAGCTGCTAATTTTGTTGACTTCTCTCTAGGCATTGATACTGTTGGTGACGTGAGAATACCTGCTAGCTTTTGTGGCATTTTTGGGTTTCGACCTTCTCATGGATCTGTTTCCCAAGTTGGAATCATACCTATATCAACAAGTCTTGACACCGTTGGATTGTTTGCTAGGGATCCTAATGTACTGCGCCGAGTTGGCCATGTGCTTTTGCAACTTCCATACGTTGGTCAACGCAATCCAAGACAAATTATTTTAGCTGATGATTGCTTTCAACTGCTGAAGATGCCTGTTGTCAGGGTTACTCAGGCGGTGACCAAATCAACTGAGAACATTTTTGGCAAACAAGTATTGAAGCATGAAAATCTTGGAAGCTATTTGAGTTCTAAAGTTCCGAAATTGAAAGAGTTAATTGGGATAAAGACAAATGGCAATCTGAGTTCTTCTTCAATTAGAGTGCTGGCCAATGTGATGCAGACTCTTGAAAGGATTGAGTTCAAAAGCAATCATGGGGAATGGATTGACTCGGTGAAGCCAGATTTGGATCCTGCTTTAATAGAGCAGTTAAATGAGAAGTTGGAGACATCAGATACAGTAATTGAAAACCTCAAGTCTGTTAGAAATGAAACCCGTATGGCTATTAATTCTCTTTTGAAGGATGATGGAGTTCTGGTCATCCCAACCACTGCCGATCCTCCTCCTAAACTTGGTGGAAAGGAGATTTTTTCAGAAGAGTACCAGGGTCGTTTATTTAGTTCATTGAGCATTGCTAGTATATCCGGTTGCTGTCAGGTCACCTTGCCACTGGGATTTCATGATAAATGTCCTGTATCTGTATCCTTCTTAGCCAGGCATGGGGCAGATCGCTTTTTACTAGATACTGTACAGACCATGTACAAGTCTCTAAAAGAGGAGGCTGAGGCTGCTTCCAAAGCCAAATTCTCAAAGAATGCTATAAGCCAAGAACAGTCGGCTGAGATTGCAAAAGAAAAGGGCAATCAAGCATATAAAGAAAAACAATGGGAGAAGGCTATTGGTTGTTACACTGAAGCCATCAAGCTCAACGGCAGAAATGCTACATATTACAGCAATAGGGCTGCAGCATATTTAGAACTTGGACGGTTTCACCAAGCAGAGGCTGATTGCAGTAAAGCTATTGACCTGGATAAAAAGAATGTTAAATCCTATTTACGGAGAGGTACAGCGAGAGAGATGCTTGGTTTTTACAAGGAAGCAATTGATGATTTTAGTCATGCTCTTGTACTCGAACCTACAAACAAAAGAGCGTCGATATCTGCCGAGAGATTAAGAAAGCTATTCACAAGTTGA 1776 43.3 MASNSANLWVLLGLGLAGILLMTKKLKKAIREDFGAFIERLQLLPPPQPAPPKAPHPLTGLTFAVSDVFEIEGHVTGFGHPDWARTHDAASRTAPIVSALVEGGATCIGKTVVSELSMGISGENKHHGTPTNPASHYTAPGGSSSGAAVAVAANFVDFSLGIDTVGDVRIPASFCGIFGFRPSHGSVSQVGIIPISTSLDTVGLFARDPNVLRRVGHVLLQLPYVGQRNPRQIILADDCFQLLKMPVVRVTQAVTKSTENIFGKQVLKHENLGSYLSSKVPKLKELIGIKTNGNLSSSSIRVLANVMQTLERIEFKSNHGEWIDSVKPDLDPALIEQLNEKLETSDTVIENLKSVRNETRMAINSLLKDDGVLVIPTTADPPPKLGGKEIFSEEYQGRLFSSLSIASISGCCQVTLPLGFHDKCPVSVSFLARHGADRFLLDTVQTMYKSLKEEAEAASKAKFSKNAISQEQSAEIAKEKGNQAYKEKQWEKAIGCYTEAIKLNGRNATYYSNRAAAYLELGRFHQAEADCSKAIDLDKKNVKSYLRRGTAREMLGFYKEAIDDFSHALVLEPTNKRASISAERLRKLFTS 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1588852 1595798 - Carg09099-RA Car11g00290 156243

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00290 591 Coils Coil 441 461 - -
Car11g00290 591 MobiDBLite consensus disorder prediction 121 140 - -
Car11g00290 591 Coils Coil 335 355 - -
Car11g00290 591 MobiDBLite consensus disorder prediction 124 140 - -
Car11g00290 591 Pfam TPR repeat 481 522 - -
Car11g00290 591 ProSiteProfiles TPR repeat profile. 508 541 IPR019734 GO:0005515
Car11g00290 591 Pfam Amidase 55 441 IPR023631 -
Car11g00290 591 ProSiteProfiles TPR repeat profile. 542 575 IPR019734 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00290 - - - csv:101221204 1008.05
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car10g00312 Car11g00290 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01309 Car-Chr6:9374737 Car11g00290 Car-Chr11:1588852 5.37E-11 dispersed
Car07g00594 Car-Chr7:3014397 Car11g00290 Car-Chr11:1588852 2.93E-06 dispersed
Car10g00939 Car-Chr10:7499375 Car11g00290 Car-Chr11:1588852 1.79E-103 dispersed
Car10g00941 Car-Chr10:7515037 Car11g00290 Car-Chr11:1588852 1.01E-51 dispersed
Car11g00290 Car-Chr11:1588852 Car19g00374 Car-Chr19:5575114 1.26E-17 dispersed
Car14g01426 Car-Chr14:11953321 Car11g00290 Car-Chr11:1588852 1.95E-11 dispersed
Car12g00976 Car-Chr12:9843426 Car11g00290 Car-Chr11:1588852 9.47E-23 transposed
Car19g00100 Car-Chr19:809061 Car11g00290 Car-Chr11:1588852 1.35E-08 transposed
Car19g00202 Car-Chr19:1961075 Car11g00290 Car-Chr11:1588852 0 transposed
Car10g00312 Car-Chr10:1527516 Car11g00290 Car-Chr11:1588852 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g204 Blo04g00853 Blo16g00111 . . . Bpe13g00379 Bma06g00068 . . . Cma10g00330 Cma11g00315 Car10g00312 Car11g00290 . . Cpe04g01367 Bhi02g00148 Tan09g1815 . . Hepe09g0395 . . Cla06g01417 Cam06g1570 Cec06g1630 Cco06g1622 Clacu06g1532 Cmu06g1486 Cre06g2295 . . . Cone19ag0334 . . . . Blo13g00181 . . . . Bpe15g00544 . . . Cmo10g00356 Cmo11g00320 . . . . . . . . . . . . . . . . . . . . Lsi06g01280 Csa01g00438 Chy02g02307 Cme02g01678
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004673 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 2 1 2 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g00290 Car_Chr11 FPKM 0.606809 1.55461 4.329206 3.147221 7.464599 7.455894 6.789036 0.837441 1.312542 1.988848