Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00294 ATGGGGAACTCAGCGTTCTGTGCGCCTTCGATGGCATCCAATGGCGCCGCGAAGGTCTTGACCTTAGACGGAAACTTGCAGAGCTTCATGAAGCCAGTGAAGGCCGCTGAATTAATGATCGAGCATTCCGGAAAATTCCTCTGCGATTCCGGCGATCTCAAGGTCGGCCACCGGATTCCAGGCCTTTTGACGGAGGAGTATCTTGAGGGCGGCCGATTGTACTTTCTACTTCCGATGGATCTTCTTTACTCTGTGTTGACGATCGAGGAAATGAGTTCTCTCACCTACATCGCTACGAAGGCTCTGAAACGTGGAAATTCGAGTGGATTTGGAAGGATCTTCCCTGTTTTGATCAGTGAACTCTGTATTTTTCCGTCGGATGTCAATGGATTGAAATCGGTGGACGGCGATGGAGAGAATAATCAAAGTTCAAAGCCGGTGCAGAGATTGATGTCGAAACAGAGATCGTGGAAGCCGGCGCTCGAAACCATTGCTGAGACTTCGTGCACATAG 513 49.9 MGNSAFCAPSMASNGAAKVLTLDGNLQSFMKPVKAAELMIEHSGKFLCDSGDLKVGHRIPGLLTEEYLEGGRLYFLLPMDLLYSVLTIEEMSSLTYIATKALKRGNSSGFGRIFPVLISELCIFPSDVNGLKSVDGDGENNQSSKPVQRLMSKQRSWKPALETIAETSCT 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1606708 1607220 - Carg09095-RA Car11g00294 156247

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00294 170 Pfam PADRE domain 1 166 IPR025322 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00294 - - - mcha:111007254 275.789
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car10g00317 Car11g00294 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00294 Car-Chr11:1606708 Car20g00989 Car-Chr20:11535667 3.10E-15 dispersed
Car10g00317 Car-Chr10:1564555 Car11g00294 Car-Chr11:1606708 4.85E-99 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g178 . . . . . . . . . . Cma10g00334 Cma11g00319 Car10g00317 Car11g00294 Sed08g0412 . . Bhi02g00164 Tan09g1806 Cmetu05g0436 . Hepe09g0401 . . Cla06g01410 Cam06g1563 Cec06g1623 Cco06g1615 Clacu06g1525 Cmu06g1479 Cre06g2288 . . . . . . . . . . . . . . . . . Cmo10g00362 Cmo11g00324 . . . . . . . . . . . . . . . . . . . . Lsi06g01269 Csa01g00446 Chy02g02298 Cme02g01669
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011378 0 1 0 0 0 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g00294 Car_Chr11 FPKM 4.531927 4.135335 3.765012 4.665155 8.481282 9.878496 9.373316 10.925892 10.346361 10.507595