Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00304 ATGGCAAGCCCATCTCCACCGCCGGCGACCTCCACCACCTTCACCATCCTTCTCATTTTGATATCCTTTGAGGTCTTCTCATCGAAGGCTGCTTCTACAGACGCAGAAGCGCTTCTCAAGTTCAAAGGGTCTCTGGAAATGAACAATGATGTGTTGGGAAATTGGGCCGCCGGGTCCTCCCCTTGCACCGGCGACAAGGCGAACTGGGTCGGGATTCTTTGCGAGAAGGGGAATGTCTGGGGATTGAAGCTTGAGAACATGGGGCTCAAGGGTCACATTGACGTTGAGTCTCTGGAAGGGGTGCCCCAATTAAGGTCAATCAGTCTTATGAAGAATGACTTTGATGGGTCTCTGCCGGACGTCAAGAGACTCGGGGCATTGAAATCCCTGTATTTGTCAGGAAACCACTTCTCAGGGGACATTCCTGGGGATAAATTTTCAGGCATGTTGTCTTTGAAGAAAGTTTATTTGGCTCAGAACCATCTGGAGGGGCAGATTCCTTGGTCCTTGGCTGAGTTGCCACGATTGTTGGAGCTGAGGCTTGAAGCGAACCACTTTTCTGGCCAAATTCCTAATTTTGCACAGAAGACATTGAAGGTCTTTAATGTCTCCGGCAATGAACAACTTCGTGGCTCAATCCCACGAGCTTTCAGCAACTTCGATCCATCCTCCTTTAAAGGCCTTCACTGTTTATGTGGAAAACCACTTGATAAGCCATGCAGCACTTCAAAAATGCCATCAATTGCGAGCATCATAATGGTTTCAATAGCTGTGACAGCGGCTCTACTTGCCATCGGAGCCGGAATAGTCATCCTTAGCCGTCGAAACCAATCGTCTTCTAATGAAGAGAATCCAGCCCACAGCAAATCTCCAAATGCTGGTCTGTCAAGTCCAGCAATCGGGTCGAGGTCACCCGATCGAGGCTCCAGTCATGGAAGCGTGGCGGGTAGACGGGCAGCCGAGAGTGCTAAGTTGTCATTTGTAAGAGATGATATAGAGAGGTTTGATTTATCAGACTTGCTTAAAGCCAATGCAGAAATCCTAGGAAGTGGATGCTTTGGATCTTCCTACAAAGCAGCCTTGACCAATGGACCTGTGATGGTTGTGAAGAGATTCAAGCAAATGAACAATGTGGACAGAGAGGAATTCCAAGAACATATGAGGAGAATTGGAAGGTTGAAACACCCCAACTTACTTCCTCTCGTCGCCTACTACTACAAAAAGGAAGAAAAACTTCTCATTACAGACTATGTTGAGAAGGGTAGCTTGGCTGTTCAACTTCACGGGCACCAAGCCATGGGACAACCAGCCATTGATTGGCCTTCAAGGTTGAAGATCATCAAGGGCGTTGCAAAGGGTCTTCGTCATCTCTATGCTGAACTTCCGAGTCTTATAACCCCACACGGCCATCTCAAGTCCTCAAATGTCCTTCTCAAGGCCAATTTTGAGCCCCTTCTTTCAGACTATGGCTTGATCCCGGTTGTGAACCAAGAACACGCCCAAGAGCTAATGGTGGCTTACAAATCTCCCGAGTACATTCAACTAGGTCGCATCACAAAAAAGACAGACGTGTGGAGCTTTGGGATGTTGATCTTTGAGATTCTAAGTGGGAAATTCCCAGCCAACTTTCTGCGTCAGAGCAAGAGTGGCAGCGAGGAGGAAGATTTGGCAAGTTGGGTCAAATCTATTCCTGAAAAAGAATGGATCGGCCAAGTGCTTGATAAGGACATGGGGCCAACCAAGAACAGTGATGGTGAGATTGCGAAGCTACTGAAGATTGCAATAGCATGTTGCGAGAACGACTTCGAGAAGAGAATGGATTTGCGAGAGGTTGTGGAGAAGATCGAGGAGTTGAAAGAAAAAGATGGGGATGAAGATTTCTATTCATCATACGCAAGTGAAGCTGATATTAGATCTTCAAGAGGGTTATCTGACGAACTCAATTTCGCCATATGA 1956 47.19 MASPSPPPATSTTFTILLILISFEVFSSKAASTDAEALLKFKGSLEMNNDVLGNWAAGSSPCTGDKANWVGILCEKGNVWGLKLENMGLKGHIDVESLEGVPQLRSISLMKNDFDGSLPDVKRLGALKSLYLSGNHFSGDIPGDKFSGMLSLKKVYLAQNHLEGQIPWSLAELPRLLELRLEANHFSGQIPNFAQKTLKVFNVSGNEQLRGSIPRAFSNFDPSSFKGLHCLCGKPLDKPCSTSKMPSIASIIMVSIAVTAALLAIGAGIVILSRRNQSSSNEENPAHSKSPNAGLSSPAIGSRSPDRGSSHGSVAGRRAAESAKLSFVRDDIERFDLSDLLKANAEILGSGCFGSSYKAALTNGPVMVVKRFKQMNNVDREEFQEHMRRIGRLKHPNLLPLVAYYYKKEEKLLITDYVEKGSLAVQLHGHQAMGQPAIDWPSRLKIIKGVAKGLRHLYAELPSLITPHGHLKSSNVLLKANFEPLLSDYGLIPVVNQEHAQELMVAYKSPEYIQLGRITKKTDVWSFGMLIFEILSGKFPANFLRQSKSGSEEEDLASWVKSIPEKEWIGQVLDKDMGPTKNSDGEIAKLLKIAIACCENDFEKRMDLREVVEKIEELKEKDGDEDFYSSYASEADIRSSRGLSDELNFAI 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1662825 1665308 + Carg09084-RA Car11g00304 156257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00304 651 Pfam Protein tyrosine and serine/threonine kinase 346 615 IPR001245 GO:0004672|GO:0006468
Car11g00304 651 MobiDBLite consensus disorder prediction 279 317 - -
Car11g00304 651 MobiDBLite consensus disorder prediction 279 309 - -
Car11g00304 651 Pfam Leucine rich repeat 127 186 IPR001611 GO:0005515
Car11g00304 651 Pfam Leucine rich repeat N-terminal domain 32 74 IPR013210 -
Car11g00304 651 ProSiteProfiles Protein kinase domain profile. 342 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00001 Car-Chr1:9182 Car11g00304 Car-Chr11:1662825 0 dispersed
Car08g00985 Car-Chr8:6610544 Car11g00304 Car-Chr11:1662825 0 dispersed
Car09g00467 Car-Chr9:2604099 Car11g00304 Car-Chr11:1662825 5.99E-64 dispersed
Car11g00304 Car-Chr11:1662825 Car12g00260 Car-Chr12:1743914 0 dispersed
Car10g00326 Car-Chr10:1623298 Car11g00304 Car-Chr11:1662825 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89165 PF07714 PK_Tyr_Ser-Thr 6.40E-32 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00304 - - csv:101213261 991.49