Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00315 ATGGGCACCCTTCCCGATTCCTTCTTATTCTCTCTGATTTTCCTCTTCACCGTCGTCTCTCCAGCCGCCGCCGCCGCCCTCCCCGGCGATCCTTCTCTAAACCTTTTGCTTCCTCACCCAATTTTGTATCGCTTCAAGGCCATACAGGAAACTGTTTTTGATGCTTCTCCATCTCCCCCACCGCCGCCGTTGCCCTCTCCTCCTCCACCGGAAGACAAACCCGTCTACTCTCCGTTCCGGCCTAGCATGGCGGTGGTTGTCGGCGTTCTCACTACCACTTTCTCTATCACGTTCCTTCTTCTTCTCTACGCTAAGCACTGCAAGCGTGGGAATGCGGTGGTGGTTGGGTACTCGAGATATCCCAATTCGGTGATAGGTGCTCCGAGCTTCACGACGAGGAAGAACTCCGGCATCGACCAGGCGGTAATTGAATCGCTGCCGATTTTTCGATTTGGGTCGTTGAGCGGTCAAAAGGAAGGCCTTGAATGCGCCGTTTGCCTCGACAAATTCGAGCAAACGGAGATTCTTAGACTCCTTCCGAAATGCAAACACGCGTTCCATGTCGAGTGTGTCGATACTTGGCTTGATGCCCACTCCACTTGCCCTCTCTGCCGTTACCGAGTCGACCCGGAGGACGTCTTATTAATCGAAGACGTCAATATATTTCTCTACAACCCGGCGCCGGCACCGCCTCCGATGCCTCCACCGCGGGATTCAAACTCTAAGGATGTAGTATTGAACTTAGAACAGGGGAGAAAAAGTGGCAAGGCTGGATCCGGGAGAGTCTCCGGCAGACACTCATCGGTGGGTGAGAAGCGAACTGGTGAATCCAGTCGCCGAGATCCGGCATTGTTGAGACGATCCCTCGACAGCAAGAGCAGCGAAACGGTGGCCATCGGGTGCTTCGATCGGCATCGGAAGGACGGGCTACTTTTGCCGGACGAGAAAACTAATCAGAATCAGAATCAGAATCAGAGCAGATTCGAGCACCGGATCATAGTGTCGCCGAGGGCGCCGGTGGTGGTACAGGGGCAGCAGAGATGGAGCGATGTACATGCGTCGGATTTGCTGTATCTACGGTCAGAAATGATAATATCTGACAGCCGCAGGTTCTCGGTAGCTTCATTACCACCGGAATTAAAGAGACAGCGACGGATGGGGATCATGGGGAAGCATGCCGGAAAAGGGACCGGGTTGATGATGGCAGACGTGTAA 1215 54.07 MGTLPDSFLFSLIFLFTVVSPAAAAALPGDPSLNLLLPHPILYRFKAIQETVFDASPSPPPPPLPSPPPPEDKPVYSPFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAVVVGYSRYPNSVIGAPSFTTRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLDKFEQTEILRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDVLLIEDVNIFLYNPAPAPPPMPPPRDSNSKDVVLNLEQGRKSGKAGSGRVSGRHSSVGEKRTGESSRRDPALLRRSLDSKSSETVAIGCFDRHRKDGLLLPDEKTNQNQNQNQSRFEHRIIVSPRAPVVVQGQQRWSDVHASDLLYLRSEMIISDSRRFSVASLPPELKRQRRMGIMGKHAGKGTGLMMADV 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1725317 1726531 + Carg09073-RA Car11g00315 156268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00315 404 Pfam Ring finger domain 162 205 IPR001841 -
Car11g00315 404 MobiDBLite consensus disorder prediction 250 289 - -
Car11g00315 404 MobiDBLite consensus disorder prediction 55 73 - -
Car11g00315 404 ProSiteProfiles Zinc finger RING-type profile. 163 205 IPR001841 -
Car11g00315 404 MobiDBLite consensus disorder prediction 266 288 - -
Car11g00315 404 MobiDBLite consensus disorder prediction 54 73 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00315 Car-Chr11:1725317 Car11g00514 Car-Chr11:2783647 5.06E-51 dispersed
Car15g01196 Car-Chr15:9310846 Car11g00315 Car-Chr11:1725317 1.11E-13 dispersed
Car11g00315 Car-Chr11:1725317 Car05g00467 Car-Chr5:2660437 9.36E-29 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00315 K19041 - csv:101203916 590.882