Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00318 ACCACAACCAACAGCCTCGGCTCCGAACGTGAAAGAGAGAGAAAAAAGCTTCGGCTTTCTAAAGAACAAGCCACTTTGCTCGAAGAAAGCTTCAAACTTCACACCACTTTGAATCCTGCTCAGAAACAGGCACTTGCCCACCAATTAAACCTCAAAACACGACAAGTGGAAGTCTGGTTCCAAAACAGACGTGCAAGGACGAAATTGAAGCAAACGGAAGTGGACTGCGAGTTCTTGAAGAAATGCTGCGAGAGGCTGAACGAAGAGAATCGGAGGTTGAAGAAAGAGTTGCATGAATTAAGATCCATCAAACTCGGAGCTTCCCAGTTGTATATTCAGCTCCCCAAGGCGGCGACGCTCACAATTTGCCCCTCATGCGACAAGATCACCAGGACACCCGCCGCCAACGCCGCCGCCGACCCCAACTCTCCGCCACTATAA 441 49.89 TTTNSLGSERERERKKLRLSKEQATLLEESFKLHTTLNPAQKQALAHQLNLKTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELHELRSIKLGASQLYIQLPKAATLTICPSCDKITRTPAANAAADPNSPPL 146
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1739736 1740531 - Carg09070-RA Car11g00318 156271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00318 146 Pfam Homeodomain 14 68 IPR001356 GO:0003677
Car11g00318 146 ProSiteProfiles 'Homeobox' domain profile. 10 70 IPR001356 GO:0003677
Car11g00318 146 ProSitePatterns 'Homeobox' domain signature. 45 68 IPR017970 GO:0000981|GO:0006355
Car11g00318 146 Coils Coil 69 103 - -
Car11g00318 146 Pfam Homeobox associated leucine zipper 70 102 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00318 Car-Chr11:1739736 Car17g00882 Car-Chr17:7382958 7.36E-57 dispersed
Car10g00338 Car-Chr10:1676097 Car11g00318 Car-Chr11:1739736 1.75E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4249 PF00046 Homeodomain 1.60E-16 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00318 K09338 - csv:101203427 233.802