Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car11g00318 | ACCACAACCAACAGCCTCGGCTCCGAACGTGAAAGAGAGAGAAAAAAGCTTCGGCTTTCTAAAGAACAAGCCACTTTGCTCGAAGAAAGCTTCAAACTTCACACCACTTTGAATCCTGCTCAGAAACAGGCACTTGCCCACCAATTAAACCTCAAAACACGACAAGTGGAAGTCTGGTTCCAAAACAGACGTGCAAGGACGAAATTGAAGCAAACGGAAGTGGACTGCGAGTTCTTGAAGAAATGCTGCGAGAGGCTGAACGAAGAGAATCGGAGGTTGAAGAAAGAGTTGCATGAATTAAGATCCATCAAACTCGGAGCTTCCCAGTTGTATATTCAGCTCCCCAAGGCGGCGACGCTCACAATTTGCCCCTCATGCGACAAGATCACCAGGACACCCGCCGCCAACGCCGCCGCCGACCCCAACTCTCCGCCACTATAA | 441 | 49.89 | TTTNSLGSERERERKKLRLSKEQATLLEESFKLHTTLNPAQKQALAHQLNLKTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELHELRSIKLGASQLYIQLPKAATLTICPSCDKITRTPAANAAADPNSPPL | 146 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1739736 | 1740531 | - | Carg09070-RA | Car11g00318 | 156271 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car11g00318 | 146 | Pfam | Homeodomain | 14 | 68 | IPR001356 | GO:0003677 | |
Car11g00318 | 146 | ProSiteProfiles | 'Homeobox' domain profile. | 10 | 70 | IPR001356 | GO:0003677 | |
Car11g00318 | 146 | ProSitePatterns | 'Homeobox' domain signature. | 45 | 68 | IPR017970 | GO:0000981|GO:0006355 | |
Car11g00318 | 146 | Coils | Coil | 69 | 103 | - | - | |
Car11g00318 | 146 | Pfam | Homeobox associated leucine zipper | 70 | 102 | IPR003106 | GO:0006355|GO:0043565 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car11g00318 | Car-Chr11:1739736 | Car17g00882 | Car-Chr17:7382958 | 7.36E-57 | dispersed | |
Car10g00338 | Car-Chr10:1676097 | Car11g00318 | Car-Chr11:1739736 | 1.75E-71 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
4249 | PF00046 | Homeodomain | 1.60E-16 | CL0123 | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car11g00318 | K09338 | - | csv:101203427 | 233.802 |