Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00322 ATGGCCGTCGACCTCGCAGCGTTTCCGGCCACCATTGACGACCAAACCGCCATCCAAGATGCCGCCTCCGCCAGTTTACAGAGCATGGAGAATCTAATCCGTCTCTTATCCAAACAACAACCCACTCAAAAAATCGCCGATCTCGATTGCTCTCAAGTCACCGATTTCACCGTCTCCAAATTCAAGCGATTCATTTCCCTCCTCAACCGCACCGGACATGCCCGGTTCCGTCGCGGTTCTTCCTCTGTTACCGATTCCTCTGTTTCCGTTCTCAATTCTCTCGATCCACTTCCCAGTTCCTCCACTATTGACTTCCTTAAATCGCCCGATTCCAAGGCTCCGACTGAGTCCACTACGACGTCGTCTCTCATGTCCACGATCACCGGCGACGGCAGCGTTTCCAACGAAAAGCTTGGTCTGTCACTCTTCACGCCGCCACCGCCACTGCCGGCGGTTTCCTCTGGTAAACCGCCCCTGTCGGCGAAGAGGAAGTGCGATGATAGATCCCGATTTGGTTGCAAGATCAATTCCAAGGAGTGTCACTGCGCGAAGCGAAGGAAATCGGGAGTGAAAAAAACCGTACGAGTTCCGGCGATCAGTTCTAAGATCGCCGAGATACCTTCCGACGAGTATTCTTGGAGAAAGTACGGCCAAAAGCCCATCAAAGGCTCGCCGTATCCGAGAGGTTATTACAGATGCAGCGCCGTCAAAGGATGTCCGGCGAGGAAAAAAGTTGAAAGAGCTCGCGATGATCCGGCGATGCTCGTCGTAACTTACGACGGAGATCACCGACACCCGCCGGCCACGGTGCCGAGAGCGGCGGCCGATGCCAGCGTTGGCTTCGTTTCCCAGACGTGTTGA 861 54.7 MAVDLAAFPATIDDQTAIQDAASASLQSMENLIRLLSKQQPTQKIADLDCSQVTDFTVSKFKRFISLLNRTGHARFRRGSSSVTDSSVSVLNSLDPLPSSSTIDFLKSPDSKAPTESTTTSSLMSTITGDGSVSNEKLGLSLFTPPPPLPAVSSGKPPLSAKRKCDDRSRFGCKINSKECHCAKRRKSGVKKTVRVPAISSKIAEIPSDEYSWRKYGQKPIKGSPYPRGYYRCSAVKGCPARKKVERARDDPAMLVVTYDGDHRHPPATVPRAAADASVGFVSQTC 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1758429 1759507 - Carg09066-RA Car11g00322 156275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00322 286 Pfam Plant zinc cluster domain 162 204 IPR018872 -
Car11g00322 286 Pfam WRKY DNA -binding domain 209 266 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car11g00322 286 ProSiteProfiles WRKY domain profile. 202 268 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car11g00322 286 MobiDBLite consensus disorder prediction 102 126 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car10g00344 Car11g00322 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00322 Car-Chr11:1758429 Car03g00867 Car-Chr3:6952711 2.40E-65 dispersed
Car10g00344 Car-Chr10:1703899 Car11g00322 Car-Chr11:1758429 7.62E-119 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4250 PF03106 WRKY 1.00E-25 CL0274 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00322 - - mcha:111006845 389.808