Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00332 ATGAATTACTTGGAGAATGGCGTGTACATGCCCGAAGATCTCGGCAGTTGGGGACTTGACGATCTGGTTCCCAGCTACTATGATTCCAGTTCGCCGGAGGGAGTTCTATCGCCGTCGGCGGCTTCGAAGAACATAGTATCGGAGAGGAATAGGAGGAGGAGGCTTAATGATAGGCTTTTTGCACTTCGAGCGGTGGTTCCAAATATTAGTAAGATGGATAAGGCTTCCATTATTAAAGATGCAATCGATCACATCCAGAAGTTGCGTGAACAAGAGAGGAGGATTGAAACTGAAATTTATGAGCTCGAATCGGGAAAGTCAAGGAAGAAGATAACGCGGTATGAGTTTGAGCAGGAGGTGCCATTGTTGCATACAGCAAAGAGGAATAGAACAGAGCAGTTCAGCTATTACGATTCTTCTGCTACAAGATATTCCCCCATTGAAGTACTGGATCTAAGTGTAACGTATATGGGGGAAAGAACAATCGTGGTGAGCTTAACATGTTGCAAAAGAGCAGATTCAATGGTTAAACTATGTAAAGTTTTTGAATCACTGAAGCTCAAGATCATCACTGCCAATATCACTGCTGTCTCTGGAAGGCTTTTGAAAACTGTGTTCATCGAGGCTGGACAAGAGGAGAGAGATCTCTTGAAGATTAAAATAGAAACAGCCCTTGCAGGTCTTAATGATCCCCAGAGCCCCGTGAGTATCTAA 714 43.98 MNYLENGVYMPEDLGSWGLDDLVPSYYDSSSPEGVLSPSAASKNIVSERNRRRRLNDRLFALRAVVPNISKMDKASIIKDAIDHIQKLREQERRIETEIYELESGKSRKKITRYEFEQEVPLLHTAKRNRTEQFSYYDSSATRYSPIEVLDLSVTYMGERTIVVSLTCCKRADSMVKLCKVFESLKLKIITANITAVSGRLLKTVFIEAGQEERDLLKIKIETALAGLNDPQSPVSI 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1815961 1818510 + Carg09056-RA Car11g00332 156285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00332 237 Coils Coil 78 105 - -
Car11g00332 237 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 39 88 IPR011598 GO:0046983
Car11g00332 237 Pfam Helix-loop-helix DNA-binding domain 46 88 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car11g00332 Car12g00870 CCT
Car05g00671 Car11g00332 CCT
Car10g00353 Car11g00332 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00332 Car-Chr11:1815961 Car20g00464 Car-Chr20:2587922 9.95E-21 dispersed
Car10g00353 Car-Chr10:1741309 Car11g00332 Car-Chr11:1815961 9.44E-115 wgd
Car11g00332 Car-Chr11:1815961 Car12g00870 Car-Chr12:8484802 4.66E-38 wgd
Car11g00332 Car-Chr11:1815961 Car05g00671 Car-Chr5:4206214 1.53E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4251 PF00010 HLH 2.70E-10 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00332 - - cmo:103494233 319.701