Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car11g00332 | ATGAATTACTTGGAGAATGGCGTGTACATGCCCGAAGATCTCGGCAGTTGGGGACTTGACGATCTGGTTCCCAGCTACTATGATTCCAGTTCGCCGGAGGGAGTTCTATCGCCGTCGGCGGCTTCGAAGAACATAGTATCGGAGAGGAATAGGAGGAGGAGGCTTAATGATAGGCTTTTTGCACTTCGAGCGGTGGTTCCAAATATTAGTAAGATGGATAAGGCTTCCATTATTAAAGATGCAATCGATCACATCCAGAAGTTGCGTGAACAAGAGAGGAGGATTGAAACTGAAATTTATGAGCTCGAATCGGGAAAGTCAAGGAAGAAGATAACGCGGTATGAGTTTGAGCAGGAGGTGCCATTGTTGCATACAGCAAAGAGGAATAGAACAGAGCAGTTCAGCTATTACGATTCTTCTGCTACAAGATATTCCCCCATTGAAGTACTGGATCTAAGTGTAACGTATATGGGGGAAAGAACAATCGTGGTGAGCTTAACATGTTGCAAAAGAGCAGATTCAATGGTTAAACTATGTAAAGTTTTTGAATCACTGAAGCTCAAGATCATCACTGCCAATATCACTGCTGTCTCTGGAAGGCTTTTGAAAACTGTGTTCATCGAGGCTGGACAAGAGGAGAGAGATCTCTTGAAGATTAAAATAGAAACAGCCCTTGCAGGTCTTAATGATCCCCAGAGCCCCGTGAGTATCTAA | 714 | 43.98 | MNYLENGVYMPEDLGSWGLDDLVPSYYDSSSPEGVLSPSAASKNIVSERNRRRRLNDRLFALRAVVPNISKMDKASIIKDAIDHIQKLREQERRIETEIYELESGKSRKKITRYEFEQEVPLLHTAKRNRTEQFSYYDSSATRYSPIEVLDLSVTYMGERTIVVSLTCCKRADSMVKLCKVFESLKLKIITANITAVSGRLLKTVFIEAGQEERDLLKIKIETALAGLNDPQSPVSI | 237 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1815961 | 1818510 | + | Carg09056-RA | Car11g00332 | 156285 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car11g00332 | 237 | Coils | Coil | 78 | 105 | - | - | |
Car11g00332 | 237 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 39 | 88 | IPR011598 | GO:0046983 | |
Car11g00332 | 237 | Pfam | Helix-loop-helix DNA-binding domain | 46 | 88 | IPR011598 | GO:0046983 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Car11g00332 | Car12g00870 | CCT | |
Car05g00671 | Car11g00332 | CCT | |
Car10g00353 | Car11g00332 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car11g00332 | Car-Chr11:1815961 | Car20g00464 | Car-Chr20:2587922 | 9.95E-21 | dispersed | |
Car10g00353 | Car-Chr10:1741309 | Car11g00332 | Car-Chr11:1815961 | 9.44E-115 | wgd | |
Car11g00332 | Car-Chr11:1815961 | Car12g00870 | Car-Chr12:8484802 | 4.66E-38 | wgd | |
Car11g00332 | Car-Chr11:1815961 | Car05g00671 | Car-Chr5:4206214 | 1.53E-70 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
4251 | PF00010 | HLH | 2.70E-10 | No_clan | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car11g00332 | - | - | cmo:103494233 | 319.701 |