Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car11g00338 | TATAAGAAGCGTCCTCTTACTTGCCATTACCTCTTTTGGTTTCACTTTCATTCCGAGTGCTGCTGTAAACTATGGCTGTTAGAGATCATTCAATTTGAAGATCTCCTTTCTTTTTGCCTATCTCCTCGAGGTACACTTGAAGTCACGGTTATCAGTCATTGTGCGAGTTCTTATGTAAAGACATTGGAGATCAATATGAAAGGTACTGGAAGAAGATTGACCCAGAAGGAATCTGGCAAGTGTTCTCACTCCAAGATGGAAACTGGATCAGAGTTGATATTACCTCTGAAGTTGAAAAGGTGTAGCAAAATATCCCATTCCAAACAGAAAAAATCAAGAACGAAATCACATGCACAGGAAATTGGTTCAACATTGAAGAGGAGACCATTTCCTAAATCCTCGAGCAAGGGGAACAAAAATGTGACAATTAGACAACTGGCTGGGAAAAAATTTCTGCTAAAGAAACTTAATTCAAAATATACCAAGGACTTACTTTTGTCTAAGCTTCAAGGTGGTAAATCCCTGCCGTCATCTAGTACGGAAGGGAATGCAGAGAAGGTTGAGCCAGTGACCAAGATAAACCAACAAAGGAAAAGGAGGAAGAACAAGGGAAAAAGGGAAAAAGTGGAGTTAGATGAAGCTTCTCGCCTACAGAGAAGAACAAGATACCTTATTATTAAGATGAAGCTAGAGCAGAACCTTATCGATGCCTACTCTGGAGAAGGTTGGAAAGGCCAGAGCCGAGAAAAAATTAGGCCAGAAAAGGAACTCCAGAGAGCCATGAAGCAGATATTGCAGTGCAAACTTGGAATCCGTGATGCTATTCGCCAGCTGGATTTGCTTGGTTCAGTAGGATGCATTGAAGATTCTGTTATTGGTCCTGATGGATCTGTCTACCACGAACATATATTCTGTGCAAAATGTAAGTTGCGTGAAGCTTTTCCAGATAATGACATTATACTTTGCGATGGGACATGCAACTGTGCTTTTCATCAAAAATGTCTGGATCCACCATTAGACACGGAAAATATTCCTCCAGGAGACCAGGGTTGGTTTTGCAAATTTTGTGAGTGCAAGATGGAAATATTGGAGGGAATGAATGCACATCTTGGTACCCGGTTCTCAATGAACGTTAGTTGGGAGGACATTTTCAAAGAAGAAGCTGCTTTCCCTGATGGTAGAAATGCATCGCTTAATCATGAGGAAGATTGGCCCTCAGATGATTCCGCAGATGATGACTATGATCCAGATAAGAAGGAAATTGGCTATGACAACCTAAGCGGGGAAGAAAATGACAAGGATGTTTTTGAGGAGTCGAGTAGTTCGACCAGCTTGAGTTGGTCTTTAGATGGCGAGGATTTAACCGATAGAGATGGCATTGGATGTGAAGATCACTTTGGTGCTAGCAGCAGCATAGTTTCTGATGGCTCCAATGAAGAGGGTATAACGGGTGGCCGTCGGCAACGGCAGGCTGTTGATTATAAGAAGTTATATGTCGAAATGTTTGGAAAGGATTCTACAGCACATGAACAAGTTAGTGAAGATGAAGACTGGGGACCTGCAAAAAGAAGACGGAGGGAAAAGGAATGTGATGCTGCAAGTACTCTTATGTCTCTTTGTGAAAGTGAAAAAAAGAGTCCGAAAATTGACGTGGAAGCTGAGAAAAGACCTCTCAATTCGCAAAGTAGATCATTTTTCAGAATTCCTCTTTATGCAGTGGAGAAACTTCGCCAAGTGTTTGCTGAAAATGAACTTCCCTCTAGAGAGGTCAAGGAGAACCTTTCAATAGAGTTGGGTCTTGATGCTGAAAAGGTCAGCAAATGGTTCAAGAATGCACGATATTCTGCACTAAGAACCAGAAAGGCAGAGGGAGCAACACAATCCCATAGTCCCAATAAGACTCTCAACGAGCCCAGATTAGCAGCAGATTCAAAGGAAATGTCTGCGTGTCCTCCTTCATCAGAGGACGCACCAATAAAAGAACTGCAGCTGAAATCGCGCAATACTCACTACAAGAAAAAGCAGCACAGAAAATCGTCTCTCGTGTCTTCCAACAATAACAAGGATGCTCTTGATTCAGGTGATGATATAAGCTTGAAGAATCTCCTAAAGAATAGGAAAACAAAGGTAAAGAAGAGGGTTAAATTCGTAGCTAGAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGTCGAGGTGGAGGTCGAGAAGCAGAAGTGGAGATGGAGAGACTGTGTAAAATTAAGGGTAGATTAGAGATAATGAAGCAGAAATTACTTAGACTATCAAATAAGAAAGAAGATGGGGTTTTAGATAGGTCACACATGTTTGAACAGTCTATTGTATATGTTCCTGTGGCAGTGTTAAAGGAGAAGGTACAAACAGATGGAAATAAACGATATCGTTAA | 2412 | 41.79 | YKKRPLTCHYLFWFHFHSECCCKLWLLEIIQFEDLLSFCLSPRGTLEVTVISHCASSYVKTLEINMKGTGRRLTQKESGKCSHSKMETGSELILPLKLKRCSKISHSKQKKSRTKSHAQEIGSTLKRRPFPKSSSKGNKNVTIRQLAGKKFLLKKLNSKYTKDLLLSKLQGGKSLPSSSTEGNAEKVEPVTKINQQRKRRKNKGKREKVELDEASRLQRRTRYLIIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRAMKQILQCKLGIRDAIRQLDLLGSVGCIEDSVIGPDGSVYHEHIFCAKCKLREAFPDNDIILCDGTCNCAFHQKCLDPPLDTENIPPGDQGWFCKFCECKMEILEGMNAHLGTRFSMNVSWEDIFKEEAAFPDGRNASLNHEEDWPSDDSADDDYDPDKKEIGYDNLSGEENDKDVFEESSSSTSLSWSLDGEDLTDRDGIGCEDHFGASSSIVSDGSNEEGITGGRRQRQAVDYKKLYVEMFGKDSTAHEQVSEDEDWGPAKRRRREKECDAASTLMSLCESEKKSPKIDVEAEKRPLNSQSRSFFRIPLYAVEKLRQVFAENELPSREVKENLSIELGLDAEKVSKWFKNARYSALRTRKAEGATQSHSPNKTLNEPRLAADSKEMSACPPSSEDAPIKELQLKSRNTHYKKKQHRKSSLVSSNNNKDALDSGDDISLKNLLKNRKTKVKKRVKFVARGGGGGGGGGGGGGRGGGREAEVEMERLCKIKGRLEIMKQKLLRLSNKKEDGVLDRSHMFEQSIVYVPVAVLKEKVQTDGNKRYR | 803 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1841450 | 1850989 | - | Carg09050-RA | Car11g00338 | 156291 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car11g00338 | 803 | Pfam | Homeodomain | 572 | 614 | IPR001356 | GO:0003677 | |
Car11g00338 | 803 | ProSiteProfiles | Zinc finger PHD-type profile. | 302 | 359 | IPR019787 | - | |
Car11g00338 | 803 | ProSitePatterns | Zinc finger PHD-type signature. | 305 | 356 | IPR019786 | - | |
Car11g00338 | 803 | MobiDBLite | consensus disorder prediction | 105 | 141 | - | - | |
Car11g00338 | 803 | MobiDBLite | consensus disorder prediction | 620 | 693 | - | - | |
Car11g00338 | 803 | MobiDBLite | consensus disorder prediction | 470 | 484 | - | - | |
Car11g00338 | 803 | MobiDBLite | consensus disorder prediction | 394 | 450 | - | - | |
Car11g00338 | 803 | MobiDBLite | consensus disorder prediction | 415 | 437 | - | - | |
Car11g00338 | 803 | MobiDBLite | consensus disorder prediction | 621 | 637 | - | - | |
Car11g00338 | 803 | MobiDBLite | consensus disorder prediction | 171 | 212 | - | - | |
Car11g00338 | 803 | MobiDBLite | consensus disorder prediction | 171 | 185 | - | - | |
Car11g00338 | 803 | MobiDBLite | consensus disorder prediction | 467 | 487 | - | - | |
Car11g00338 | 803 | ProSiteProfiles | 'Homeobox' domain profile. | 559 | 619 | IPR001356 | GO:0003677 | |
Car11g00338 | 803 | Pfam | PHD-finger | 304 | 359 | IPR019787 | - | |
Car11g00338 | 803 | MobiDBLite | consensus disorder prediction | 717 | 737 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car04g00435 | Car-Chr4:2470963 | Car11g00338 | Car-Chr11:1841450 | 2.70E-12 | dispersed | |
Car11g00338 | Car-Chr11:1841450 | Car16g00298 | Car-Chr16:1845775 | 1.48E-11 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
4253 | PF00628 | PHD | 1.10E-09 | CL0390 | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car11g00338 | - | - | cmos:111441056 | 1315.83 |