Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00338 TATAAGAAGCGTCCTCTTACTTGCCATTACCTCTTTTGGTTTCACTTTCATTCCGAGTGCTGCTGTAAACTATGGCTGTTAGAGATCATTCAATTTGAAGATCTCCTTTCTTTTTGCCTATCTCCTCGAGGTACACTTGAAGTCACGGTTATCAGTCATTGTGCGAGTTCTTATGTAAAGACATTGGAGATCAATATGAAAGGTACTGGAAGAAGATTGACCCAGAAGGAATCTGGCAAGTGTTCTCACTCCAAGATGGAAACTGGATCAGAGTTGATATTACCTCTGAAGTTGAAAAGGTGTAGCAAAATATCCCATTCCAAACAGAAAAAATCAAGAACGAAATCACATGCACAGGAAATTGGTTCAACATTGAAGAGGAGACCATTTCCTAAATCCTCGAGCAAGGGGAACAAAAATGTGACAATTAGACAACTGGCTGGGAAAAAATTTCTGCTAAAGAAACTTAATTCAAAATATACCAAGGACTTACTTTTGTCTAAGCTTCAAGGTGGTAAATCCCTGCCGTCATCTAGTACGGAAGGGAATGCAGAGAAGGTTGAGCCAGTGACCAAGATAAACCAACAAAGGAAAAGGAGGAAGAACAAGGGAAAAAGGGAAAAAGTGGAGTTAGATGAAGCTTCTCGCCTACAGAGAAGAACAAGATACCTTATTATTAAGATGAAGCTAGAGCAGAACCTTATCGATGCCTACTCTGGAGAAGGTTGGAAAGGCCAGAGCCGAGAAAAAATTAGGCCAGAAAAGGAACTCCAGAGAGCCATGAAGCAGATATTGCAGTGCAAACTTGGAATCCGTGATGCTATTCGCCAGCTGGATTTGCTTGGTTCAGTAGGATGCATTGAAGATTCTGTTATTGGTCCTGATGGATCTGTCTACCACGAACATATATTCTGTGCAAAATGTAAGTTGCGTGAAGCTTTTCCAGATAATGACATTATACTTTGCGATGGGACATGCAACTGTGCTTTTCATCAAAAATGTCTGGATCCACCATTAGACACGGAAAATATTCCTCCAGGAGACCAGGGTTGGTTTTGCAAATTTTGTGAGTGCAAGATGGAAATATTGGAGGGAATGAATGCACATCTTGGTACCCGGTTCTCAATGAACGTTAGTTGGGAGGACATTTTCAAAGAAGAAGCTGCTTTCCCTGATGGTAGAAATGCATCGCTTAATCATGAGGAAGATTGGCCCTCAGATGATTCCGCAGATGATGACTATGATCCAGATAAGAAGGAAATTGGCTATGACAACCTAAGCGGGGAAGAAAATGACAAGGATGTTTTTGAGGAGTCGAGTAGTTCGACCAGCTTGAGTTGGTCTTTAGATGGCGAGGATTTAACCGATAGAGATGGCATTGGATGTGAAGATCACTTTGGTGCTAGCAGCAGCATAGTTTCTGATGGCTCCAATGAAGAGGGTATAACGGGTGGCCGTCGGCAACGGCAGGCTGTTGATTATAAGAAGTTATATGTCGAAATGTTTGGAAAGGATTCTACAGCACATGAACAAGTTAGTGAAGATGAAGACTGGGGACCTGCAAAAAGAAGACGGAGGGAAAAGGAATGTGATGCTGCAAGTACTCTTATGTCTCTTTGTGAAAGTGAAAAAAAGAGTCCGAAAATTGACGTGGAAGCTGAGAAAAGACCTCTCAATTCGCAAAGTAGATCATTTTTCAGAATTCCTCTTTATGCAGTGGAGAAACTTCGCCAAGTGTTTGCTGAAAATGAACTTCCCTCTAGAGAGGTCAAGGAGAACCTTTCAATAGAGTTGGGTCTTGATGCTGAAAAGGTCAGCAAATGGTTCAAGAATGCACGATATTCTGCACTAAGAACCAGAAAGGCAGAGGGAGCAACACAATCCCATAGTCCCAATAAGACTCTCAACGAGCCCAGATTAGCAGCAGATTCAAAGGAAATGTCTGCGTGTCCTCCTTCATCAGAGGACGCACCAATAAAAGAACTGCAGCTGAAATCGCGCAATACTCACTACAAGAAAAAGCAGCACAGAAAATCGTCTCTCGTGTCTTCCAACAATAACAAGGATGCTCTTGATTCAGGTGATGATATAAGCTTGAAGAATCTCCTAAAGAATAGGAAAACAAAGGTAAAGAAGAGGGTTAAATTCGTAGCTAGAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGTCGAGGTGGAGGTCGAGAAGCAGAAGTGGAGATGGAGAGACTGTGTAAAATTAAGGGTAGATTAGAGATAATGAAGCAGAAATTACTTAGACTATCAAATAAGAAAGAAGATGGGGTTTTAGATAGGTCACACATGTTTGAACAGTCTATTGTATATGTTCCTGTGGCAGTGTTAAAGGAGAAGGTACAAACAGATGGAAATAAACGATATCGTTAA 2412 41.79 YKKRPLTCHYLFWFHFHSECCCKLWLLEIIQFEDLLSFCLSPRGTLEVTVISHCASSYVKTLEINMKGTGRRLTQKESGKCSHSKMETGSELILPLKLKRCSKISHSKQKKSRTKSHAQEIGSTLKRRPFPKSSSKGNKNVTIRQLAGKKFLLKKLNSKYTKDLLLSKLQGGKSLPSSSTEGNAEKVEPVTKINQQRKRRKNKGKREKVELDEASRLQRRTRYLIIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRAMKQILQCKLGIRDAIRQLDLLGSVGCIEDSVIGPDGSVYHEHIFCAKCKLREAFPDNDIILCDGTCNCAFHQKCLDPPLDTENIPPGDQGWFCKFCECKMEILEGMNAHLGTRFSMNVSWEDIFKEEAAFPDGRNASLNHEEDWPSDDSADDDYDPDKKEIGYDNLSGEENDKDVFEESSSSTSLSWSLDGEDLTDRDGIGCEDHFGASSSIVSDGSNEEGITGGRRQRQAVDYKKLYVEMFGKDSTAHEQVSEDEDWGPAKRRRREKECDAASTLMSLCESEKKSPKIDVEAEKRPLNSQSRSFFRIPLYAVEKLRQVFAENELPSREVKENLSIELGLDAEKVSKWFKNARYSALRTRKAEGATQSHSPNKTLNEPRLAADSKEMSACPPSSEDAPIKELQLKSRNTHYKKKQHRKSSLVSSNNNKDALDSGDDISLKNLLKNRKTKVKKRVKFVARGGGGGGGGGGGGGRGGGREAEVEMERLCKIKGRLEIMKQKLLRLSNKKEDGVLDRSHMFEQSIVYVPVAVLKEKVQTDGNKRYR 803
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1841450 1850989 - Carg09050-RA Car11g00338 156291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00338 803 Pfam Homeodomain 572 614 IPR001356 GO:0003677
Car11g00338 803 ProSiteProfiles Zinc finger PHD-type profile. 302 359 IPR019787 -
Car11g00338 803 ProSitePatterns Zinc finger PHD-type signature. 305 356 IPR019786 -
Car11g00338 803 MobiDBLite consensus disorder prediction 105 141 - -
Car11g00338 803 MobiDBLite consensus disorder prediction 620 693 - -
Car11g00338 803 MobiDBLite consensus disorder prediction 470 484 - -
Car11g00338 803 MobiDBLite consensus disorder prediction 394 450 - -
Car11g00338 803 MobiDBLite consensus disorder prediction 415 437 - -
Car11g00338 803 MobiDBLite consensus disorder prediction 621 637 - -
Car11g00338 803 MobiDBLite consensus disorder prediction 171 212 - -
Car11g00338 803 MobiDBLite consensus disorder prediction 171 185 - -
Car11g00338 803 MobiDBLite consensus disorder prediction 467 487 - -
Car11g00338 803 ProSiteProfiles 'Homeobox' domain profile. 559 619 IPR001356 GO:0003677
Car11g00338 803 Pfam PHD-finger 304 359 IPR019787 -
Car11g00338 803 MobiDBLite consensus disorder prediction 717 737 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00435 Car-Chr4:2470963 Car11g00338 Car-Chr11:1841450 2.70E-12 dispersed
Car11g00338 Car-Chr11:1841450 Car16g00298 Car-Chr16:1845775 1.48E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4253 PF00628 PHD 1.10E-09 CL0390 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00338 - - cmos:111441056 1315.83