Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00359 ATGAACTCTTCGTCCTCTTCTAATTCCTCATCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCTTCAAATTGGCTTGCTTTTTCTCTCTCTAACAATCCCAACTCTCTCTCTCTATTCCACCACCCTAATCCTCCCGATCTCTCCATTTTCTCCCCCAAGCTCGAGGATTTTCTCCGGGGAGCTTCCACCCCTCCGCCGCTGCCGCCTCCCTTCCAGTTTTCTCCCCATCAAACGCCACCCCTCACTTACTGTGAAGAATCTGAGATTTGCGATTCTGATCTCAAAACCATAGCCGCTAGTTTCCTCCGTGGATCTCCCTCCCAGTTCCCCGAACAACACCTTCACCACCATCTCCACGCGCCGCCTCCCCACCCTCTCCCTGATACCCTAACCAATCCGCCGCCGCCGCCTCCCAAGAAGTCCGTCGACACTTTCGGCCAACGTACCTCCATCTACCGCGGTGTTACAAGACATAGATGGACTGGTCGATATGAAGCTCACTTGTGGGATAACAGTTGCAGAAGAGAGGGTCAGAGTAGGAAAGGAAGACAAGGTGGTTATGACAAGGAAGAAAAAGCAGCTCGAGCTTATGATCTCGCCGCTCTCAAATACTGGGGTCCGACCACCACCACCAACTTTCCGGTGTCGGATTACGAAAAAGACCTTGAGAATATGAAGAACATGACCAGACAAGAATTTGTCGCTTCATTAAGAAGGAAAAGCAGCGGTTTCTCTAGAGGAGCTTCTATTTACAGAGGTGTAACAAGGCACCACCAACATGGCAGATGGCAAGCAAGAATCGGGAGGGTTGCTGGCAATAAAGATCTCTACCTTGGAACTTTCAGCACTCAGGAAGAAGCAGCGGAGGCGTATGACATTGCGGCCATCAAATTCCGAGGCCTAAACGCAGTCACCAACTTCGACATAAGTCGCTACGACGTCAAAAGCATAGCCAGCAGCAACCTTCCCATCGGAGGCATGTCGGCCACCAAATCCAAACCCACCACCGACTCCGCCGCCTCCGAAGACCGCGAGGTCCACCATTCTCCCGTCTCCTCCACCGCGACTCTCCTCCCATCTCACCCCAACACCTCCACTCTAACCTTCGGAATGCCGCCCATCAAACAAGACCCATCCGACCAATACTGGTCCATGTTCGGCTACAACGTTCCACCACCAACATCCTCATCCTCCTTCACAATCTTCCAACAACCTTCAAACCCCGCATCCACAATGTTCCCCCCCGTCGCCGACCTCCCTCCAACCGCCTCGCCGCCGCTCCCCGAAGGCGGCGCCTACGAGCAGCACCAACAATTTGCAGCCCCGATAGCATTAAGTAGAGCAAGCCTGTTTCAAACGCCAATATTTGGAATAGAATGA 1380 52.61 MNSSSSSNSSSSSSSSSSSSSSNWLAFSLSNNPNSLSLFHHPNPPDLSIFSPKLEDFLRGASTPPPLPPPFQFSPHQTPPLTYCEESEICDSDLKTIAASFLRGSPSQFPEQHLHHHLHAPPPHPLPDTLTNPPPPPPKKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGPTTTTNFPVSDYEKDLENMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRYDVKSIASSNLPIGGMSATKSKPTTDSAASEDREVHHSPVSSTATLLPSHPNTSTLTFGMPPIKQDPSDQYWSMFGYNVPPPTSSSSFTIFQQPSNPASTMFPPVADLPPTASPPLPEGGAYEQHQQFAAPIALSRASLFQTPIFGIE 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1969480 1971891 - Carg09029-RA Car11g00359 156312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00359 459 MobiDBLite consensus disorder prediction 1 24 - -
Car11g00359 459 ProSiteProfiles AP2/ERF domain profile. 151 214 IPR001471 GO:0003700|GO:0006355
Car11g00359 459 MobiDBLite consensus disorder prediction 106 144 - -
Car11g00359 459 MobiDBLite consensus disorder prediction 123 141 - -
Car11g00359 459 ProSiteProfiles AP2/ERF domain profile. 250 308 IPR001471 GO:0003700|GO:0006355
Car11g00359 459 MobiDBLite consensus disorder prediction 350 372 - -
Car11g00359 459 Pfam AP2 domain 151 206 IPR001471 GO:0003700|GO:0006355
Car11g00359 459 Pfam AP2 domain 250 300 IPR001471 GO:0003700|GO:0006355
Car11g00359 459 MobiDBLite consensus disorder prediction 323 373 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00104 Car-Chr5:544015 Car11g00359 Car-Chr11:1969480 5.26E-117 dispersed
Car05g00805 Car-Chr5:7560029 Car11g00359 Car-Chr11:1969480 7.04E-41 dispersed
Car07g00553 Car-Chr7:2818030 Car11g00359 Car-Chr11:1969480 1.55E-111 dispersed
Car11g00359 Car-Chr11:1969480 Car20g00058 Car-Chr20:321250 3.63E-125 dispersed
Car16g00775 Car-Chr16:4945950 Car11g00359 Car-Chr11:1969480 1.73E-93 dispersed
Car17g00860 Car-Chr17:7254275 Car11g00359 Car-Chr11:1969480 6.95E-83 dispersed
Car18g00890 Car-Chr18:9784440 Car11g00359 Car-Chr11:1969480 2.83E-10 dispersed
Car11g00359 Car-Chr11:1969480 Car12g00953 Car-Chr12:9641161 5.40E-126 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4254 PF00847 AP2 8.40E-10 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00359 K09285 - csv:101210453 553.903