Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00378 ATGGGGATCGCTAATCTCTCATACGAGGCATGCCGCCATAAGAGACTCGAAGAAAACAAGAAGCGGATGGAAGCCCTAAATCTGCCTTTGCTTTCTCAAGCTCTCCTCCATTCTTCCCCTTCCAAATCCTCGCCTAGTAAGCTCGCCAAGCCTCGCGTGACGCAGAAACAACTCGTTGTTGTGAGGAGATCCAGTCGCATAGCGAAACAATCCGCCCCCGTTTACGCCGAAGTTGTTGTAAATCGTGTGGTGATTCCTAGAAGGATCTCCAATGCTACAGATCTTTCAAATCGAGTTTATTCTTCGGATGAAGCAAGAAAAAATGCCTTTGAAAGAGCTGAGCGATTACAATCTGGATTAGAGACGAATTATCCCAACTTTATAAGGTCGATGCTTCCATCTCATGTTAGTGGTGGATTCTGGCTGGGCCTTCCTTCTCATTTCTGCAAGACGCACCTTCCAAATCGCGATGGAATTGTGACATTAATAGATGAAGATGGAGATGAATATCCAACAGTATATTTAGCACGAAAAACAGGACTCAGTGGCGGATGGAAGGGTTTTTCAGTTGCTCATAAATTGGCTGATGGGGATGCTGTGATTTTTCAATTCATTAAACCTACAACGTGCAAGGTGATTGTTTTCCCTTCAAGTTAG 657 44.6 MGIANLSYEACRHKRLEENKKRMEALNLPLLSQALLHSSPSKSSPSKLAKPRVTQKQLVVVRRSSRIAKQSAPVYAEVVVNRVVIPRRISNATDLSNRVYSSDEARKNAFERAERLQSGLETNYPNFIRSMLPSHVSGGFWLGLPSHFCKTHLPNRDGIVTLIDEDGDEYPTVYLARKTGLSGGWKGFSVAHKLADGDAVIFQFIKPTTCKVIVFPSS 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2074794 2075895 + Carg09009-RA Car11g00378 156331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00378 218 Pfam B3 DNA binding domain 127 212 IPR003340 GO:0003677
Car11g00378 218 ProSiteProfiles B3 DNA-binding domain profile. 127 218 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00378 Car-Chr11:2074794 Car19g00463 Car-Chr19:6314735 9.01E-70 dispersed
Car11g00378 Car-Chr11:2074794 Car12g00498 Car-Chr12:3133682 3.13E-116 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4258 PF02362 B3 1.10E-12 CL0405 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00378 - - csv:101205473 350.517