Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00393 ATGAGTGTTACCATTCTTCCAGATCTCGGGACTGAGATTTTCATTCCGGTATGTGCCGTTGTCGGAATCGTCTTCTCTTTGGTGCAGTGGTATTATGTTTCGCAGGTTAAGCTCTCGCCTGGCCGAGATGCCGCTCACAACAACAGCGCCGGTTCTAAGAATGGCTACTCCGACTACCTCATCGAGGAGGAAGAGGGCGTCAACGACCATAACGTTGTGATTAAGTGTGCCGAAATTCAGAGTGCCATTTCTGAGGGAGCAACGTCCTTCCTTTTCACGGAGTACAAGTACGTTGGCATCTTTATGGTGCTGTTTGCAGTCTTGATTTTCGTATTCCTTGGCTCAGTTGAGAGTTTTAGTACCAAGCCTCAACCGTGCACATATGACAAAACAAGGACTTGTAAGCCAGCTTTGGCGACTGCTATATTTAGCACTGTATCATTTTTACTTGGTGCAGTTACTTCAGTGGTTTCTGGTTTCCTTGGAATGAAAATTGCTACATACGCAAATGCCAGAACCACCTTGGAGGCAAGAAAGGGTGTTGGAAAGGCATTTATTACTGCTTTTAGGTCTGGTGCTGTCATGGGCTTTCTCCTAGCTGCCAATGGTCTCTTGGTTTTGTTTATTGCCATTAACCTCTTCAAATTGTACTATGGTGATGATTGGGGTGGTCTTTTTGAGTCTATCACTGGGTATGGTCTTGGTGGTTCTTCAATGGCTCTCTTTGGAAGAGTTGGTGGTGGTATCTACACCAAAGCTGCCGATGTTGGTGCTGACCTTGTGGGCAAGGTGGAAAGGAACATCCCCGAGGATGATCCCAGAAACCCAGCTGTGATTGCTGACAATGTTGGTGACAATGTTGGGGATATAGCCGGTATGGGATCTGATCTGTTTGGTTCATATGCTGAATCTTCATGTGCTGCTCTCGTTGTTGCTTCTATCTCTTCTTTTGGAAACAACCATGAATTGACACCAATGCTCTACCCTCTCATCGTTAGTTCTATGGGTATTCTTGTTTGCCTGATCACCACCTTATTTGCAACTGATTTCTTTGAGATCAAGGCTGTTAAGGAAATTGAGCCAGCATTGAAGAAGCAACTTATAATTTCCACTGTTCTAATGACCTTTGGAATTGCAATTGTTACTTGGTTGTCTGTTCCATCATCATTCACCATTTTCAACTTTGGAACTCAAAAAGTTGTTACGAACTGGAAACTGTTCTTGTGCGTTGCTGTGGGTCTCTGGGCTGGGCTTATAATAGGATTTGTGACAGAGTACTATACGAGCAATGCATACAGCCCTGTGCAAGATGTTGCTGATTCTTGCCGAACTGGAGCTGCTACAAATGTCATTTTTGGGTTGGCGTTGGGATACAAATCTGTCATTATCCCTATTTTTGCAATTGCGGTCAGTATTTTTGTGAGTTTCACCTTTGCTGCCATGTACGGCATTGCTGTAGCTGCCCTTGGAATGCTGAGTACCATAGCTACTGGTTTGGCCATTGATGCATATGGTCCAATCAGTGACAATGCTGGAGGCATTGCTGAGATGGCAGGCATGAGCCACAGAATTCGGGAGAGAACTGATGCCCTCGATGCTGCTGGAAACACCACTGCAGCCATTGGAAAGGGTTTTGCCATTGGTTCAGCTGCCCTTGTGTCCCTTGCTCTTTTCGGTGCCTTTGTCAGCCGTGCCGGTGTCACTGCTGTTGACGTCTTGACTCCCAAAGTTTTTATTGGTTTGATTGTGGGTGCCATGCTCCCCTACTGGTTTTCTGCCATGACAATGAAGAGTGTTGGTAGTGCAGCCCTAAAGATGGTTGAGGAGGTGCGAAGGCAGTTCAACACTATCCCAGGTCTCATGGAGGGTACTGCCAAGCCCGACTACGCTACATGTGTCAAGATCTCAACTGATGCTTCTATCAAGGAGATGATCCCACCTGGTGCTCTTGTCATGTTGACACCACTAATTGTTGGTATCCTTTTTGGAGTTGAAACTCTTTCTGGTGTCCTTGCTGGATCCCTTGTTTCTGGTGTGCAGATTGCCATTTCTGCATCTAACACCGGAGGTGCCTGGGATAACGCTAAGAAGTACATCGAGGCTGGTGCCTCTGAGCACGCAAGAACCCTTGGCCCGAAAGGATCAGACCCACACAAAGCCGCTGTTATCGGTGACACAATCGGAGACCCGCTGAAGGATACATCCGGACCATCTTTGAACATTCTGATCAAGTTGATGGCTGTCGAGTCCCTTGTGTTTGCTCCTTTCTTTGCCAGTCACGGTGGTCTTCTCTTCAAGATCTTCTGA 2307 46.6 MSVTILPDLGTEIFIPVCAVVGIVFSLVQWYYVSQVKLSPGRDAAHNNSAGSKNGYSDYLIEEEEGVNDHNVVIKCAEIQSAISEGATSFLFTEYKYVGIFMVLFAVLIFVFLGSVESFSTKPQPCTYDKTRTCKPALATAIFSTVSFLLGAVTSVVSGFLGMKIATYANARTTLEARKGVGKAFITAFRSGAVMGFLLAANGLLVLFIAINLFKLYYGDDWGGLFESITGYGLGGSSMALFGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGNNHELTPMLYPLIVSSMGILVCLITTLFATDFFEIKAVKEIEPALKKQLIISTVLMTFGIAIVTWLSVPSSFTIFNFGTQKVVTNWKLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFTFAAMYGIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRAGVTAVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGILFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSDPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFASHGGLLFKIF 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2159840 2164573 - Carg27195-RA Car11g00393 156346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00393 768 Hamap Putative K(+)-stimulated pyrophosphate-energized sodium pump [hppA]. 9 758 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Car11g00393 768 PANTHER PYROPHOSPHATE-ENERGIZED VACUOLAR MEMBRANE PROTON PUMP 1 767 - -
Car11g00393 768 PIRSF H+-PPtase 11 766 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Car11g00393 768 PANTHER K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP 1 767 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Car11g00393 768 Pfam Inorganic H+ pyrophosphatase 23 753 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Car11g00393 768 TIGRFAM V_PPase: V-type H(+)-translocating pyrophosphatase 11 763 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car10g00472 Car11g00393 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00993 Car-Chr12:9955228 Car11g00393 Car-Chr11:2159840 0 transposed
Car17g00585 Car-Chr17:5581760 Car11g00393 Car-Chr11:2159840 5.81E-153 transposed
Car10g00472 Car-Chr10:2361594 Car11g00393 Car-Chr11:2159840 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00393 K23025 - csv:101222673 1430.23