Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00409 ATGGAGAAAAGGTATGGTTGTTGGGCTGTTTTGACTCGTACTGTTTCTGGTGTTTGCAAATCCTCTGCTTCCAGAGATTCTCCCAACACTATTCCTCGAACTAGCCTAGTTTATGATTCTGCTACCGAAACACGGTATTTAAATGCTAGCAACAGAGATCTCTGTACCCTAAATGAAACTGAGCTAGCCTCTGATAATGCCAATTCAACACGATCAGATAACAAAACAACAAGCAAACTTCTTCAGTTCTCTTTTCATGAGCTCAAGGCTGCCACTGGAAACTTCAGACCTGACAGTATTCTTGGGGAAGGTGGATTTGGTTTCGTCTTTAAAGGATGGATTGAAGAGAATGGGACAGCCCCTGCAAAACCTGGATCAGGGATTACAGTAGCTGTTAAGAGCATGAAACAAGATGGTCTTCAAGGCCACAGAGAATGGGTGGCTGAGGTTGCCTTTCTTGGACAACTTCACCACCCGAATCTTGTTAAGCTTATAGGTTACTGTAACGAAGATGATCAACATTTGCTTGTTTACGAGTTTATGAGCCGTGGAAGTCTTGAAAACCATCTTTTCAGAAGGACTATACCTCTTCCATGGTCCAATAGGATTAAGATCGCCCTTGGAGCAGCGAAAGGATTGGCCTTCCTTCATAGCGGTCCAGTACCTGTTATCTATAGAGATTTTAAGACATCCAACATCTTGCTTGATTCTGAATACAATGCAAAGCTTTCGGATTTTGGTTTTGCAAAAGCAGGACCTCAAGGAGACAAGACACATGTTTCTACTAGGGTGATTGGAACATATGGCTATGCTGCTCCTGAATATGTAATGACAGGACATCTGACATCTAAAAACGATGTTTATAGCTTCGGTGTTGTGCTCCTTGAGATTGTAACGGGGAGAAGATCCATGGACAAAAAACGTCCGAGTGGGGAACAAAATCTCGTCTCATGGGCTCGGCCATATTTAGCTGATAAAAGAAGGCTATATCATATAGTGGATCCCCGTTTGGAATTCAACTATTCCATTAAAGGGGTGCAGAAGGTCTCCCAGCTTGCTTGCAGTTGCCTCAGCAGGGATCCAAAACTACGTCCAACCATGGACGAAATCGTGAAGGTTCTGACTCCACTGCAAGATCTCAACGATCTCGCCATCCTAACGTCTCACTGCCGCTTATCTTCACAAGGGAGGCGCAAGAAGAAACCTGATGGCCTCACCTACTCTCAAAGCTTCAGAGCATCTCCACTGAACACTGGAAAGCAGCATATAAGGTGA 1275 44.16 MEKRYGCWAVLTRTVSGVCKSSASRDSPNTIPRTSLVYDSATETRYLNASNRDLCTLNETELASDNANSTRSDNKTTSKLLQFSFHELKAATGNFRPDSILGEGGFGFVFKGWIEENGTAPAKPGSGITVAVKSMKQDGLQGHREWVAEVAFLGQLHHPNLVKLIGYCNEDDQHLLVYEFMSRGSLENHLFRRTIPLPWSNRIKIALGAAKGLAFLHSGPVPVIYRDFKTSNILLDSEYNAKLSDFGFAKAGPQGDKTHVSTRVIGTYGYAAPEYVMTGHLTSKNDVYSFGVVLLEIVTGRRSMDKKRPSGEQNLVSWARPYLADKRRLYHIVDPRLEFNYSIKGVQKVSQLACSCLSRDPKLRPTMDEIVKVLTPLQDLNDLAILTSHCRLSSQGRRKKKPDGLTYSQSFRASPLNTGKQHIR 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2296648 2300210 + Carg12116-RA Car11g00409 156362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00409 424 ProSitePatterns Protein kinases ATP-binding region signature. 101 133 IPR017441 GO:0005524
Car11g00409 424 MobiDBLite consensus disorder prediction 407 424 - -
Car11g00409 424 Pfam Protein tyrosine and serine/threonine kinase 99 374 IPR001245 GO:0004672|GO:0006468
Car11g00409 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Car11g00409 424 MobiDBLite consensus disorder prediction 394 424 - -
Car11g00409 424 ProSiteProfiles Protein kinase domain profile. 95 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01672 Car-Chr4:9621583 Car11g00409 Car-Chr11:2296648 0 dispersed
Car11g00409 Car-Chr11:2296648 Car15g00364 Car-Chr15:1910526 2.16E-154 dispersed
Car15g00280 Car-Chr15:1520400 Car11g00409 Car-Chr11:2296648 6.51E-94 dispersed
Car16g00465 Car-Chr16:2949967 Car11g00409 Car-Chr11:2296648 2.91E-133 dispersed
Car18g01083 Car-Chr18:10963887 Car11g00409 Car-Chr11:2296648 1.37E-65 dispersed
Car10g00490 Car-Chr10:2477115 Car11g00409 Car-Chr11:2296648 2.80E-57 wgd
Car11g00409 Car-Chr11:2296648 Car12g01166 Car-Chr12:11217885 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89168 PF07714 PK_Tyr_Ser-Thr 8.20E-47 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00409 - - bhj:120071895 829.32