Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00415 ATGTCGAGCTGCATCGATATTGCACCTGAACAGCTCTGCTACATCCCTTGCAACTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCTTGTTTGATATTGTGACAGTCCGTTGTGGGCACTGTACAAATCTATGGTCCGTGAATATGGCTGCTGCATTTCAGTCACTTTCCTGGCAAGATGTTCAGGTTCCAAATTACAATCTTTACACTTCTTGTGGACCTGATTTTCAAGGGGATTTTGGATCTTCATCCAAATGTGATAACAATAAGATGCAAATTCGAGATTCCGCTACAATTGCAGCTGAGGAACGGGAAATCCGAAGGATCAAGGCCAAGAACCCTGAGATTAGTCACAGGGAAGCTTTCAGCACAGCAGCCAAAAACTGGGCACACTTTCCTCGTATTCACTTTGGTCTCATGTTTGAAACCAATAATCAAGTGAAGATTGATGATGGTTCTGAGCGTTTGATGTCAATGGCTGCACTATTAAACAAATGA 507 42.8 MSSCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQVPNYNLYTSCGPDFQGDFGSSSKCDNNKMQIRDSATIAAEEREIRRIKAKNPEISHREAFSTAAKNWAHFPRIHFGLMFETNNQVKIDDGSERLMSMAALLNK 168
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 2339258 2341566 + Carg12122-RA Car11g00415 156368
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Car11g00415 168 Pfam YABBY protein 9 71 IPR006780 GO:0007275
Car11g00415 168 Pfam YABBY protein 107 142 IPR006780 GO:0007275
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00415 Car-Chr11:2339258 Car15g01044 Car-Chr15:8220769 9.33E-37 dispersed
Car10g00501 Car-Chr10:2522223 Car11g00415 Car-Chr11:2339258 8.05E-85 wgd
Car11g00415 Car-Chr11:2339258 Car12g01175 Car-Chr12:11290190 1.19E-63 wgd
Car11g00415 Car-Chr11:2339258 Car05g01205 Car-Chr5:11394486 2.82E-72 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4260 PF04690 YABBY 1.10E-25 CL0114 Car TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00415 K25796 - csv:101215951 289.656