Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00415 ATGTCGAGCTGCATCGATATTGCACCTGAACAGCTCTGCTACATCCCTTGCAACTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCTTGTTTGATATTGTGACAGTCCGTTGTGGGCACTGTACAAATCTATGGTCCGTGAATATGGCTGCTGCATTTCAGTCACTTTCCTGGCAAGATGTTCAGGTTCCAAATTACAATCTTTACACTTCTTGTGGACCTGATTTTCAAGGGGATTTTGGATCTTCATCCAAATGTGATAACAATAAGATGCAAATTCGAGATTCCGCTACAATTGCAGCTGAGGAACGGGAAATCCGAAGGATCAAGGCCAAGAACCCTGAGATTAGTCACAGGGAAGCTTTCAGCACAGCAGCCAAAAACTGGGCACACTTTCCTCGTATTCACTTTGGTCTCATGTTTGAAACCAATAATCAAGTGAAGATTGATGATGGTTCTGAGCGTTTGATGTCAATGGCTGCACTATTAAACAAATGA 507 42.8 MSSCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQVPNYNLYTSCGPDFQGDFGSSSKCDNNKMQIRDSATIAAEEREIRRIKAKNPEISHREAFSTAAKNWAHFPRIHFGLMFETNNQVKIDDGSERLMSMAALLNK 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2339258 2341566 + Carg12122-RA Car11g00415 156368

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00415 168 Pfam YABBY protein 9 71 IPR006780 GO:0007275
Car11g00415 168 Pfam YABBY protein 107 142 IPR006780 GO:0007275
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00415 K25796 YAB; plant-specific transcription factor YABBY family protein - csv:101215951 289.656
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00415 Car-Chr11:2339258 Car15g01044 Car-Chr15:8220769 9.33E-37 dispersed
Car10g00501 Car-Chr10:2522223 Car11g00415 Car-Chr11:2339258 8.05E-85 wgd
Car11g00415 Car-Chr11:2339258 Car12g01175 Car-Chr12:11290190 1.19E-63 wgd
Car11g00415 Car-Chr11:2339258 Car05g01205 Car-Chr5:11394486 2.82E-72 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car18g01013 . 45 214 C2C2-YABBY Transcription Factor Family AT1G69180 57.8 2.3e-46 182.6
Car02g01316 . 75 238 C2C2-YABBY Transcription Factor Family AT2G45190 59.6 1.1e-42 170.2
Car15g01044 CCT 81 236 C2C2-YABBY Transcription Factor Family AT2G45190 56.2 1.5e-41 166.4
Car02g01086 . 1 166 C2C2-YABBY Transcription Factor Family AT1G08465 66.5 8.8e-54 207.2
Car15g01044 CCT 37 224 C2C2-YABBY Transcription Factor Family AT1G08465 51.5 7.0e-43 171.0
Car02g01316 . 31 223 C2C2-YABBY Transcription Factor Family AT1G08465 52.1 2.6e-42 169.1
Car02g01316 . 42 237 C2C2-YABBY Transcription Factor Family AT4G00180 56.2 7.9e-51 197.6
Car15g01044 CCT 48 235 C2C2-YABBY Transcription Factor Family AT4G00180 55.1 1.5e-49 193.4
Car04g01775 CST 1 160 C2C2-YABBY Transcription Factor Family AT1G23420 51.4 1.4e-36 150.6
Car05g01205 . 8 175 C2C2-YABBY Transcription Factor Family AT2G26580 72.0 3.0e-61 231.9
Car12g01175 . 8 168 C2C2-YABBY Transcription Factor Family AT2G26580 69.1 1.7e-56 216.1
Car10g00501 . 7 168 C2C2-YABBY Transcription Factor Family AT2G26580 67.3 7.1e-55 210.7
Car02g01086 . 1 166 C2C2-YABBY Transcription Factor Family AT2G26580 59.0 8.4e-48 187.2
Car11g00415 . 7 152 C2C2-YABBY Transcription Factor Family AT2G26580 58.3 2.3e-45 179.1
Car15g01044 CCT 37 196 C2C2-YABBY Transcription Factor Family AT2G26580 56.4 3.3e-44 175.3
Car02g01316 . 33 195 C2C2-YABBY Transcription Factor Family AT2G26580 53.6 1.1e-42 170.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001272 2 2 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 7 3 1 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4260 PF04690 YABBY 1.10E-25 CL0114 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g00415 Car_Chr11 FPKM 60.045483 62.738194 19.22681 18.378223 53.014004 50.454029 47.242119 0.800901 0.517889 0.487833