Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00423 ATGTTTCCCCCACTGCCCCTTCTCTCTGTACTTCCTTCTCTGACAATGCCCAAGTTTAAGAAGTTTCGTGGTGTTAGGCAGCGCCATTGGGGCTCTTGGGTTTCTGAAATTCGCCATCCATTACTGAAGAGGCGGATTTGGTTGGGGACGTTTGAGACGGCGGAGGAAGCGGCAAGAGCGTATGATCAAGCTGCGATTTTGATGAGCGGACGTAATGCCAAAACCAATTTCCCGACGACCCATGACACCAACATTACTACAACCAAGGATTCCCCCAAGGGGTTGTCTGAAATATTGCAAGCTAAGCTCAAGAAATGCTGTCGGACTCCATCGCCTTCCATGACATGTTTGAGGCTCGACACTGAGAATTCCAACATTGGCGTGTGGCAGAAACGTGCTGGGCCACGGTCGGCATCTAGCTGGGTCATGACTGTTGAGCTTGGAAATAAGAAGAGCCATAACAACGAGGATGATTCTCTGATGGGTGTGGTTGTGGCTGATCAGTCCCCGGTGGCGGCGGAAGTGGCGGAGATTCCATCGGAGTTGGATGAAGAAGAGAGAATGGTGGCTTTGCAAATGGTGGAGGAACTGCTTCATATCAGCTATGATGAACCAAACGAATTGTTTGAGATTCAACAGGGGAAGGATGTTTATCTTTAG 660 49.55 MFPPLPLLSVLPSLTMPKFKKFRGVRQRHWGSWVSEIRHPLLKRRIWLGTFETAEEAARAYDQAAILMSGRNAKTNFPTTHDTNITTTKDSPKGLSEILQAKLKKCCRTPSPSMTCLRLDTENSNIGVWQKRAGPRSASSWVMTVELGNKKSHNNEDDSLMGVVVADQSPVAAEVAEIPSELDEEERMVALQMVEELLHISYDEPNELFEIQQGKDVYL 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2374062 2374800 + Carg12130-RA Car11g00423 156376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00423 219 Pfam AP2 domain 21 69 IPR001471 GO:0003700|GO:0006355
Car11g00423 219 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g01210 Car11g00423 CCT
Car05g01210 Car11g00423 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00507 Car-Chr8:3192328 Car11g00423 Car-Chr11:2374062 4.75E-31 dispersed
Car11g00423 Car-Chr11:2374062 Car12g00340 Car-Chr12:2145444 7.66E-32 dispersed
Car11g00423 Car-Chr11:2374062 Car04g01272 Car-Chr4:7380535 1.87E-72 wgd
Car11g00423 Car-Chr11:2374062 Car05g01210 Car-Chr5:11426074 9.49E-80 wgd
Car11g00423 Car-Chr11:2374062 Car09g00404 Car-Chr9:2243837 5.47E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4261 PF00847 AP2 1.40E-12 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00423 - - bhj:120071615 308.145