Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00458 ATGCCCTACATGCATATGGAGCCAGAAGAGAAACATGTGATACCATCTTCTCAAATGGTGTTAAAATCCCTACATGCCTCAAAGGATGATGAAAAGACTAGTTTATGGAAAAGGAAAGGAAAAAGGAGAGCGAAAGGATCTACCATGGAAGAACTGAAACAAGAGGAGCTTGATCCAAATCTGGAGTTCCCCTCTTCTTCTTCCTGCAAAAGCTTAACATTTCCAAGAAGGCCAGACTTTGGCTCGCTGGGGACTAAATGCTTGGTTAAAGCCAACCACTTCCTAGCCAAAATACCTGAATCAGACATAAGCCATTATAATGTTAAGATAACCCCAGAAGTTACTTCTCGTAAACTGAAGAAGAACATACTGACCGAGTTGGTCAAACATTATAGAAGCACAGAGCTGGGGATGCGACTGCCAGTTTACGATGGAGGAAGCAACCTGTACACGGCCGGATTGCTGCCTTTCACATCAAAAGAGTTCACTGTCATTTTGGCTGATGAGGAAGAGGGAGCAGCCACTCCCAGGCACTTTCTTTTCTTTTTCTTCACATATTCTGCTTTTTCTTTGTTGGTAAACTTTAGTTTAATACGGGGTAATCATATCAGGGAACGAGAATTTAAAGTGCAAATAAAGTTTGTAACTTTAGCTAGCATGCACCAGTTACAAGAATTATTTGCTGGTAAACAAGTTAAAAACCCTCAAGAAGCTTTGACCATCATTGACATCGTCTTGAGGGAGCTTCATGCTCAAAGATATATATCAGTTGGGCGATTCTTTTACTCTCCTTGCATTAAGAAACCTCAGCATGTTGGGGGTGGTTTGCAAGTTTGGCGTGGCTTCTATCAAAGCATCCGACCTACTCAAATGGGATTGTCACTAAATATTGGTGGGCATCGAAGTTTTCTTTTCCTAGGCTTCTACTTGGCTGTGTTTTGTCTGCCTGAATTGACTTTTCTTATGGTTTCTTTTGGGAATTGCATCTCATATCCAGACATGTCATCCACTGCATTCATTGAAGCAATCCCTGTCATTGATTTTGTTGCTCAAATCTTAAACAAAGATGTGTATTCAAGACCACTGTCTGATGCTGATCGTATCAAGATTAAAAAAGTGCTCAGAGGTGTAAAAGTTGAAGTTACACACAGAGGAAATGTGCGAAGGAAATACCGAATTTCAGGACTAACAACACAGCCTACAAGAGAGCTAATCTTCCCTCTTGATGAGCAAATGAACATGAAATCTGTCGTTGAATACTTCCAAGAGGTGTATGGATATACCATTCAGTACACACATTTGCCTTGCCTTCAAGTAGGAAACCAGAAGAAGGTGAACTATCTACCCATGGAGGTCAGTTCTGCCAACTACCCATCAAGTTACCTTAAACGCTCGGATCTTTTGTCCGCAGAAAATTTATGTGATGTTTTTCCTCAGGCATGTAAGATTCTTAAGGGGCAGAGATACACAAAAGGACTGAATGAAAAGCAAATAGCTTCCTTGTTGAAGGTTTCATGCCAAAGACCATCTGATCAAGAAATGGACATTTTACAGACTGTTCATCAGAATGCATACGAGGAAGATCCATATGCAAAAGAGTTCGGAATCAGCATCGACACCAAGCTTACATCGGTTGAAGCACGAGTCCTCCCATCTCCATGGCTAAAATTTCATGACACGGGAAAAGAAAGGGAACATCTGCCTCAAGTTGGTCAATGGAATATGATGAATAAGAAAGTAATAAATGGAAGTGTTGTAAGATATTGGGCTTGTATCAATTTCTCACGCAACGTCCAAGAGAGCATAGCTTGTGGTTTCTGTCAACAGCTGGTCCAGATGTGCCAAGTCTCCGGCATGGAATTTAACCCAGATCCTGCAATTCCTATATACTCCGCAAGACCAGATCAAGTGAAAAAGGCCTTAAAATATGTATGTAATGCAGTTTATACCAAACATGAAGGAATGGAGTTAGAGTTACTGATAGCCATTCTTCCGGACAACAACGGCTCTTTATATGGTGATCTTAAAAGGATCTGTGAAACAGAGTTGGGATTGATATCGCAGTGTTGTCTAACAAAGCATGTCTTCAAGAAGAGCAGACAGTATTTGGCGAATGTGTCACTTAAGATCAACGTCAAGGTCTCTACTCAATAG 2154 40.95 MPYMHMEPEEKHVIPSSQMVLKSLHASKDDEKTSLWKRKGKRRAKGSTMEELKQEELDPNLEFPSSSSCKSLTFPRRPDFGSLGTKCLVKANHFLAKIPESDISHYNVKITPEVTSRKLKKNILTELVKHYRSTELGMRLPVYDGGSNLYTAGLLPFTSKEFTVILADEEEGAATPRHFLFFFFTYSAFSLLVNFSLIRGNHIREREFKVQIKFVTLASMHQLQELFAGKQVKNPQEALTIIDIVLRELHAQRYISVGRFFYSPCIKKPQHVGGGLQVWRGFYQSIRPTQMGLSLNIGGHRSFLFLGFYLAVFCLPELTFLMVSFGNCISYPDMSSTAFIEAIPVIDFVAQILNKDVYSRPLSDADRIKIKKVLRGVKVEVTHRGNVRRKYRISGLTTQPTRELIFPLDEQMNMKSVVEYFQEVYGYTIQYTHLPCLQVGNQKKVNYLPMEVSSANYPSSYLKRSDLLSAENLCDVFPQACKILKGQRYTKGLNEKQIASLLKVSCQRPSDQEMDILQTVHQNAYEEDPYAKEFGISIDTKLTSVEARVLPSPWLKFHDTGKEREHLPQVGQWNMMNKKVINGSVVRYWACINFSRNVQESIACGFCQQLVQMCQVSGMEFNPDPAIPIYSARPDQVKKALKYVCNAVYTKHEGMELELLIAILPDNNGSLYGDLKRICETELGLISQCCLTKHVFKKSRQYLANVSLKINVKVSTQ 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2527407 2532696 - Carg12165-RA Car11g00458 156411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00458 717 Pfam Mid domain of argonaute 568 645 IPR032473 -
Car11g00458 717 Pfam Argonaute linker 1 domain 256 297 IPR014811 -
Car11g00458 717 Pfam N-terminal domain of argonaute 86 246 IPR032474 -
Car11g00458 717 Pfam PAZ domain 347 454 IPR003100 GO:0005515
Car11g00458 717 ProSiteProfiles PAZ domain profile. 343 457 IPR003100 GO:0005515
Car11g00458 717 Pfam Piwi domain 660 714 IPR003165 GO:0003676
Car11g00458 717 MobiDBLite consensus disorder prediction 26 60 - -
Car11g00458 717 Pfam Argonaute linker 2 domain 514 557 IPR032472 -
Car11g00458 717 MobiDBLite consensus disorder prediction 44 58 - -
Car11g00458 717 ProSiteProfiles Piwi domain profile. 659 717 IPR003165 GO:0003676
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00458 Car-Chr11:2527407 Car13g00206 Car-Chr13:2304489 1.69E-163 dispersed
Car11g00458 Car-Chr11:2527407 Car14g01580 Car-Chr14:12873168 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00458 K11593 - csv:101213206 1101.66