Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00462 ATGGCTGCAGTTTTCCGTTCTAGAAGCCGCATCCCTGTTTTCTTAATTTTACTTCACCTTTTTCTTCTTCTTCATTCAGTTCAATCGGAGCCGTCCGCCGACAAGGAAGCACTTCTCGATTTCTTGAATCAAACCCCCCATGAGAATCGCCTTCAATGGAATGCATCGGCCTCTGCTTGTACTTGGGTTGGAGTTAGCTGTGATGTCAATCAGTCGTTTGTTTTTGCTCTCCGGTTGCCGGGTGTTGGACTTGTTGGCCCCATTCCGGCGAATACACTCGGCCGCTTGAATAGGCTTCGAGTTCTGAGCCTCCGGTCTAATAAAATCTCAGGGGAGTTGCCGGCGGATTTTTCGAATTTGACATTTCTTCGGAGTCTTTATCTTCAGGATAACGAGCTTTCTGGTGAACTACCGGCGAGTGTGACTCAGTTGACTCGGTTGAATCGTCTGGATCTCTCGTCCAACAATTTCACTGGTTCGATTCCATTTTCGATCAATAACTTGACCCATTTGAGCGGGCTTTTTCTGGAGAATAATGGGTTTACGGGCTCTTTGCCGAGTATTCCAGCGAGTAATTTAACGAGCTTCAATGTCTCGAATAACCAGCTCAATGGATCCATTCCCGAAACCCTTTCGAAATTCTCTGCTGCCTCTTTCGCTGGGAATTTAGCGCTCTGCGGTGGTCCATTGCCGTCATGCAACCCGTTTTTTCCCTCTCCTGCTCCGTCGCCGACGTCCGCCGTGAAACCCCCAGAAATTCCCGTCGAGAGGAAGTCAAGAAAGCTCTCCATCGCTGCCATTGTCGGAATAGTCGTCGGCGCTGCTTTCGTTGCGTTTCTGTTGCTGCTTTTACTCATTTTTTGCCTCCGGAGGCGCCAGAGTCGGCAGCCGGCGAAGCCATCGAGTACGGTGGTTACTGCTCGATCTGTGCCAGCGGAGGCCGGCACATCGTCTTCCAAAGACGACATCACCGGCGGGTCGGTGGAAGCGGAGAAAAACAAATTAGTGTTCTTCGAAGGTGGGGTTTACAGTTTCGATTTGGAGGATTTGTTGAGGGCTTCAGCGGAGGTTTTGGGAAAAGGAAGTGTCGGAACGTCGTACAAGGCGGTGCTGGAAGAAGGAACCACCGTCGTCGTCAAGAGATTGAAAGATGTCGTAATGACGAAGCAGGAATTTGAAACGCAAATAGAAGCTTTGGGAAATGTAAAACATGAAAATGTGGTTCCTCTCAGAGCTTTCTACTTTTCCAGAGACGAGAAATTACTTGTTTCCGATTACATGGCCGCCGGCAGCCTTTCCGCTTCACTTCACGGAAGCAGAGGATCCGGCCGTACGCCACTTAACTGGGACAACCGGATGAAAATCGCGTTACACGCAGCGAGAGGACTGGCTCACTTACACGTGTCGGGAAAACTCGTCCACGGCAACGTCAAATCGTCGAACATCCTCCTCCACCCCAACTACGACGCCGCCGTTTCCGACTACGGCCTCAACCCTCTCTTCGGCGCCACTACGCCGCCGAACCGTATTGCCGGCTACCGCGCGCCGGAGGTTGTCGAAACTCGAAAGGTCACCTTCAAGTCCGACGTGTACAGTTTTGGCGTCTTGCTGTTGGAGCTTTTGACCGGAAAATCCCCAATTCAGGCGTCGTTGGGCGAAGAAGGGATTGATCTTCCCCGGTGGGTCCAATCAGTAGTCCGAGAGGAATGGACAGCGGAGGTTTTTGATGTGGAATTGATGAGGTACCACAATATCGAGGAGGAAATGGTTCAGTTGTTACAAATTGCGATGGCTTGTGTCGCCACAGTGCCGGACCAGCGGCCTTCAATGCAGGAAGTGGTTCGAATGATCGAGGACTTGAACCGTGTAGAGACCGACGACGGCTTACGACCATCATCCGATGACCCGTCAAAAGGATCGGAAGGGCACACGCCGCCGCAGGAGTCCAGAGCCACCCCTCCCGGAATCAGCGGAGCAGTGTAG 1983 51.89 MAAVFRSRSRIPVFLILLHLFLLLHSVQSEPSADKEALLDFLNQTPHENRLQWNASASACTWVGVSCDVNQSFVFALRLPGVGLVGPIPANTLGRLNRLRVLSLRSNKISGELPADFSNLTFLRSLYLQDNELSGELPASVTQLTRLNRLDLSSNNFTGSIPFSINNLTHLSGLFLENNGFTGSLPSIPASNLTSFNVSNNQLNGSIPETLSKFSAASFAGNLALCGGPLPSCNPFFPSPAPSPTSAVKPPEIPVERKSRKLSIAAIVGIVVGAAFVAFLLLLLLIFCLRRRQSRQPAKPSSTVVTARSVPAEAGTSSSKDDITGGSVEAEKNKLVFFEGGVYSFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVMTKQEFETQIEALGNVKHENVVPLRAFYFSRDEKLLVSDYMAAGSLSASLHGSRGSGRTPLNWDNRMKIALHAARGLAHLHVSGKLVHGNVKSSNILLHPNYDAAVSDYGLNPLFGATTPPNRIAGYRAPEVVETRKVTFKSDVYSFGVLLLELLTGKSPIQASLGEEGIDLPRWVQSVVREEWTAEVFDVELMRYHNIEEEMVQLLQIAMACVATVPDQRPSMQEVVRMIEDLNRVETDDGLRPSSDDPSKGSEGHTPPQESRATPPGISGAV 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2548674 2551111 - Carg12170-RA Car11g00462 156415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00462 660 Pfam Leucine rich repeat N-terminal domain 32 68 IPR013210 -
Car11g00462 660 Pfam Leucine Rich Repeat 98 120 IPR001611 GO:0005515
Car11g00462 660 Pfam Protein kinase domain 355 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car11g00462 660 MobiDBLite consensus disorder prediction 621 637 - -
Car11g00462 660 MobiDBLite consensus disorder prediction 621 660 - -
Car11g00462 660 MobiDBLite consensus disorder prediction 298 324 - -
Car11g00462 660 MobiDBLite consensus disorder prediction 298 325 - -
Car11g00462 660 ProSiteProfiles Protein kinase domain profile. 352 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g01237 Car11g00462 CCT
Car11g00462 Car12g01202 CCT
Car10g00545 Car11g00462 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00462 Car-Chr11:2548674 Car20g00263 Car-Chr20:1527659 0 dispersed
Car12g01296 Car-Chr12:11984585 Car11g00462 Car-Chr11:2548674 1.88E-111 dispersed
Car18g00071 Car-Chr18:369067 Car11g00462 Car-Chr11:2548674 0 dispersed
Car18g00926 Car-Chr18:10004979 Car11g00462 Car-Chr11:2548674 8.31E-174 dispersed
Car15g00307 Car-Chr15:1664124 Car11g00462 Car-Chr11:2548674 1.45E-96 transposed
Car10g00545 Car-Chr10:2736874 Car11g00462 Car-Chr11:2548674 0 wgd
Car11g00462 Car-Chr11:2548674 Car12g01202 Car-Chr12:11466762 0 wgd
Car11g00462 Car-Chr11:2548674 Car05g01237 Car-Chr5:11570461 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89169 PF00069 Pkinase 2.80E-36 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00462 - - csv:101209965 1066.22