Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00477 ATGGAAAATCAATCCAATGGAAAATCCGACTCCCATCTCAACATACCCAAAATCAAGTTCACCAAGCTCTTCATCAATGGACAATTTGTTGACTCTGTTTCAGGAAAAACTTTCGAGACGTTCGATCCAAGAACTGGTAAGGTTATCACGACGGTTGCCGCCGGTGAGAAAGAAGATGTGGATCTGGCCGTGAAAGCAGCCCGTGAAGCCTTCGATCACGGCCCTTGGCCCCGCATGTCTGGTGCCGACAGGGGACGAATAATGATGAAACTGGGGGACTTAATAGATGAACACGTGGAGGAAATCGCAGCATTGGATTCCCTGGACGGCGGAAAATTGTTTCAGATGGGGAAGATCGTCGACGTACCATCGGCTGCTAATATGCTACGGTACTACGCCGGTGCCGCGGATAAAATCCACGGGGAGGTACTCAAAATGGCAAGGCCGTTTCACGGCTACACTTTAATGGAGCCCATGGGAGTGGTGGGCCACATCATACCCTGGAACTTTCCGACCACCATGTTCTTCTTGAAAGTGAGCCCCGCCTTGGCTGCCGGCTGCACCATGCTCGTCAAACCTGCCGAGCAAACGCCGCTCTCCGCCCTCTTCTACGCCCATCTCGCTAAATTGGTCTTTCCCAATCTTCTCGGAATAATTGAATCAATTCAAATATTTGCTGGTATTCCTGATGGAGTACTGAACGTTGTGACAGGATACGGATACACTGCAGGGTCAGCAATTGCGTACCACATGGACATTGACAAGGTGAGTTTCACAGGATCAACGAAGGTGGGAAGATCGATAATGCAGGCGGCAAGCGAGAGCAATCTGAAGCAAGTATCGTTGGAATTAGGAGGCAAATCGCCGCTCCTAATCTTCGATGATGCGGATGTGAATAAAGCCGTTGATATTGCTGTTCTTGGCATTTTCTATAACAAGGGAGAAACTTGCGCGGCGAGCTCCCGAGTTTTGGTTCAAGAAGGGATTTATGATGAATTTGTGAAAAAGATTATTGAAAAGGCGAAATCTTGGGTTGTGGGAGACCCTTTCGATCCTAAAGTTCAGTATGGACCCCAGGTGGATGAAAAGCAATTGAAGAAAATTCTGGAATATATCGAGCACGGTAAGAGGGAAGGAGCCACATTGGCGACAGGCGGCAGGCGTATAGGCGAGGTGGGGTATTACGTAGAGCCGACAATCTTCACAGACGTCAAGGAACACTCGCTGATCGCACAGGACGAAATCTTCGGGCCATTCCTCTGCGTCATTAAATTCAAAACGATCGAAGAGGGAATAAAGATCGCGAACAACACAAAGTTCGGGCTAGCAGCTGGAATAGTGACGAACAGTGTAGACATAATGAACACGGTTTCGAGGTCGATCAGAGCCGGAACCATCTGGGTGAACTGTTACTTTGCTTTCGACTCGAGCTGTCCATTTGGAGGGTACAAGATGAGTGGGTTCGGTAGGGACGCTGGAATGCACGCTGTTCATAAGTATCTTCAAACCAAAGCCATCGTCACTCCTTTGGTCAACACTCCTTGGCTTTGA 1551 48.81 MENQSNGKSDSHLNIPKIKFTKLFINGQFVDSVSGKTFETFDPRTGKVITTVAAGEKEDVDLAVKAAREAFDHGPWPRMSGADRGRIMMKLGDLIDEHVEEIAALDSLDGGKLFQMGKIVDVPSAANMLRYYAGAADKIHGEVLKMARPFHGYTLMEPMGVVGHIIPWNFPTTMFFLKVSPALAAGCTMLVKPAEQTPLSALFYAHLAKLVFPNLLGIIESIQIFAGIPDGVLNVVTGYGYTAGSAIAYHMDIDKVSFTGSTKVGRSIMQAASESNLKQVSLELGGKSPLLIFDDADVNKAVDIAVLGIFYNKGETCAASSRVLVQEGIYDEFVKKIIEKAKSWVVGDPFDPKVQYGPQVDEKQLKKILEYIEHGKREGATLATGGRRIGEVGYYVEPTIFTDVKEHSLIAQDEIFGPFLCVIKFKTIEEGIKIANNTKFGLAAGIVTNSVDIMNTVSRSIRAGTIWVNCYFAFDSSCPFGGYKMSGFGRDAGMHAVHKYLQTKAIVTPLVNTPWL 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2612702 2615377 - Carg12185-RA Car11g00477 156430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00477 516 Pfam Aldehyde dehydrogenase family 29 506 IPR015590 GO:0016491
Car11g00477 516 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 310 321 IPR016160 GO:0016491
Car11g00477 516 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 282 289 IPR029510 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00003 Car-Chr5:17714 Car11g00477 Car-Chr11:2612702 8.89E-176 dispersed
Car11g00477 Car-Chr11:2612702 Car12g00001 Car-Chr12:9331 0 dispersed
Car10g00560 Car-Chr10:2833711 Car11g00477 Car-Chr11:2612702 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00477 K12355 - csv:101219029 845.884