Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00499 ATGGACGATTTACCCCCGCAAAATGCTCAAACTGGTAGTGAGGAACCGGATAGCGTGGTTGCATTTGATGTTACTGCTAAGAAACTAGTTAGACAGCTGGATTTTGCGGAGTTTGGTGGTGCAGTCTTACCAGAGCTCCCTCATTTTCAGTCTCAGTCTCGTTGTCAATCAGAGTCACCAGCCGTGATGGTGGTGCAGAGTCCGTCGCAGCCGAAGTCCCCACAACATTTGATGGTTTTGCCCGTCGGAACACAATCGCCTCATCCTGTGGCTGTGAGAAAGCCAGATTCTCCAAAGTCACGATCAAGGTCTGTAGAAACAAAAGATGCTACTCCAAAGAAACAAAAACAGTGCAACTGTAAACACTCACGCTGCTTAAAGCTGTACTGTGAGTGCTTTGCATCTGGAATATACTGTGATGGTTGCAATTGTGCAAATTGCTATAACAATGTCGAGAATGAAGTTTCTAGGAGAGAAGCAGTTGAAACTACTTTAGAACGTAATCCAAATGCATTCCGACCAAAGATAGCTAGCAGCCCGCATGGACCACGAAAAAGCAGGGATGAGATTGGAGAGGTTGTAATGCGGGGAAAGCACTACAAAGGATGCCATTGCAAGAAATCAAGTTGCTTAAAGAAGTATTGTGAGTGTTTTCAGGCCAATATTCTCTGCTCTGAAAACTGCAAGTGCATGGACTGTAAGAATTTTGAAGGAAGTGACGAGAGACAAGCACTTCTCCATGGTGACCATGTCAACAACATGGCTTATATTCAGCAGGCAGCTAATGCTGCAATAACTGGAGCTATTGGATCCTCTGGTTATGCTTGCCTTTCCACTTCACAGAAAAGAAAAGGCCCAGAGCTTTGCTTTGGCCCTACAGGGAAGGATACCCCCTGCAACAGCATAGCACAATTTCATCAGGCTAATAATATATTGTCTTCTGGCGCATCTACGTCATCTCCCCTCCCTGTTGCTCATGTTGGCAGCCCTGCAGCACCGGGACCTTCAAAGTTTTCATTCAGGTCCTTATTGGCAGACCTCATCCAGATGAACGACTTGAAGGAGCTTTGCTCAGTTTTAGTGGTGTTATCAAGCGAAGCTTCCAAGAATATAGCAGAACAAAGAATTGCTGAGAAGCAGATAAATGATCCACTGCAGATTTCACGTGCATCAACTGGAGATAGGTCACAGGACCAGGAAGCAGATGTGAAAGCCGCAGATGTTGAATGTGGAAGTTTAAACCAAGGTGATAGAATTGTACATCATAATTCCAATTCAGATAGTTCGGACACAACAACGGCAAGGCCGATGTCCCCTGGAACTTTAGCTTTAATGTGTGACGAACAGGATACCATGTTCACGGGAGCTGCTCTAGCCCATGGGTTGGCAGGCCATGGTTGCAACACATCATCACATATGCTTGATAAGTCTGTATCAGAAGTCTACATGGAGCAGGAACGGATTGTTTTGACAAAGTTTCGAGATTGTCTTAATAAACTCATCACTCCTGGAGAGATAAAAGAAACAAATTCAGTAGAAGCGAGGAATGAAAATCACAGCAAGAATTCCACCTCAAACAGTGGATACCGACAGAGAATTATTAGCAATGGGGTGGTAAAAAATGTCGCTCTCTCGGCACCCAGAATACCACCGATCGATGCTGCAGCTCATCATACTAGTAATAAAATTCCACCCCTACCTGAAAATGGGAAAGAGTAA 1719 44.74 MDDLPPQNAQTGSEEPDSVVAFDVTAKKLVRQLDFAEFGGAVLPELPHFQSQSRCQSESPAVMVVQSPSQPKSPQHLMVLPVGTQSPHPVAVRKPDSPKSRSRSVETKDATPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCANCYNNVENEVSRREAVETTLERNPNAFRPKIASSPHGPRKSRDEIGEVVMRGKHYKGCHCKKSSCLKKYCECFQANILCSENCKCMDCKNFEGSDERQALLHGDHVNNMAYIQQAANAAITGAIGSSGYACLSTSQKRKGPELCFGPTGKDTPCNSIAQFHQANNILSSGASTSSPLPVAHVGSPAAPGPSKFSFRSLLADLIQMNDLKELCSVLVVLSSEASKNIAEQRIAEKQINDPLQISRASTGDRSQDQEADVKAADVECGSLNQGDRIVHHNSNSDSSDTTTARPMSPGTLALMCDEQDTMFTGAALAHGLAGHGCNTSSHMLDKSVSEVYMEQERIVLTKFRDCLNKLITPGEIKETNSVEARNENHSKNSTSNSGYRQRIISNGVVKNVALSAPRIPPIDAAAHHTSNKIPPLPENGKE 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2700853 2706592 - Carg12207-RA Car11g00499 156452

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00499 572 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 115 150 IPR005172 -
Car11g00499 572 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 201 235 IPR005172 -
Car11g00499 572 MobiDBLite consensus disorder prediction 66 108 - -
Car11g00499 572 MobiDBLite consensus disorder prediction 417 435 - -
Car11g00499 572 ProSiteProfiles CRC domain profile. 114 238 IPR005172 -
Car11g00499 572 MobiDBLite consensus disorder prediction 94 108 - -
Car11g00499 572 MobiDBLite consensus disorder prediction 168 187 - -
Car11g00499 572 MobiDBLite consensus disorder prediction 553 572 - -
Car11g00499 572 MobiDBLite consensus disorder prediction 416 435 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00499 - - - csv:101222405 860.136
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g01259 Car11g00499 CCT
Car11g00499 Car12g01226 CCT
Car05g01259 Car11g00499 ECH
Car11g00499 Car12g01226 ECH
Car10g00582 Car11g00499 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00499 Car-Chr11:2700853 Car17g00197 Car-Chr17:1181670 1.40E-31 dispersed
Car10g00582 Car-Chr10:2937435 Car11g00499 Car-Chr11:2700853 0 wgd
Car11g00499 Car-Chr11:2700853 Car12g01226 Car-Chr12:11661240 0 wgd
Car11g00499 Car-Chr11:2700853 Car05g01259 Car-Chr5:11732054 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g318 Blo01g00513 Blo16g01025 Bda01g02058 Bda11g01097 . Bpe02g02248 . . . . Cma05g01345 Cma12g01257 Car05g01259 Car12g01226 . . Cpe18g00421 . . . . . . . Cla11g00214 . Cec11g0247 Cco11g0258 Clacu11g0377 Cmu11g0227 Cre11g0724 Cone2ag0303 Cone16ag0733 Cone4ag0740 . Lsi06g00857 Csa02g00117 Chy05g01376 . . . . . . Bpe13g01292 Bma01g00192 . Sed08g0784 Cmo05g01354 Cmo12g01288 Cma10g00634 . Car10g00582 Car11g00499 Cpe11g01118 Cpe07g01018 Bhi06g02018 Tan08g0159 Cmetu05g1534 . . . . Cla06g00866 . Cec06g0949 Cco06g0974 Clacu06g0939 Cmu06g0906 Cre06g1689 Lsi11g00253 . Chy02g01850 Cme05g01983
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car08g01016 . 14 284 CPP Transcription Factor Family AT3G22760 50.5 1.2e-62 238.0
Car05g00334 . 367 517 CPP Transcription Factor Family AT3G22760 52.0 4.1e-42 169.9
Car08g01016 . 14 283 CPP Transcription Factor Family AT3G22780 52.8 1.6e-71 268.1
Car05g00334 . 374 517 CPP Transcription Factor Family AT3G22780 52.8 4.2e-40 163.7
Car08g01016 . 14 284 CPP Transcription Factor Family AT4G14770 54.2 9.6e-71 265.4
Car05g01259 CCT,CST,ECH 90 519 CPP Transcription Factor Family AT2G20110 60.2 3.8e-137 485.7
Car12g01226 CCT,CST,ECH 90 487 CPP Transcription Factor Family AT2G20110 58.9 6.7e-126 448.4
Car11g00499 CCT,CST,ECH 89 538 CPP Transcription Factor Family AT2G20110 51.3 6.3e-116 415.2
Car10g00582 CCT,CST,ECH 6 424 CPP Transcription Factor Family AT2G20110 51.9 2.2e-108 390.2
Car08g01016 . 14 145 CPP Transcription Factor Family AT3G04850 59.1 2.0e-44 177.9
Car05g01259 CCT,CST,ECH 93 526 CPP Transcription Factor Family AT4G29000 61.8 1.7e-146 516.9
Car11g00499 CCT,CST,ECH 60 509 CPP Transcription Factor Family AT4G29000 56.2 3.1e-132 469.5
Car12g01226 CCT,CST,ECH 99 494 CPP Transcription Factor Family AT4G29000 57.3 6.5e-130 461.8
Car10g00582 CCT,CST,ECH 6 396 CPP Transcription Factor Family AT4G29000 58.5 1.4e-121 434.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002094 2 3 2 1 2 2 4 2 2 2 0 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 3 2 1 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4268 PF03638 TCR 5.30E-12 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g00499 Car_Chr11 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0