Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00499 ATGGACGATTTACCCCCGCAAAATGCTCAAACTGGTAGTGAGGAACCGGATAGCGTGGTTGCATTTGATGTTACTGCTAAGAAACTAGTTAGACAGCTGGATTTTGCGGAGTTTGGTGGTGCAGTCTTACCAGAGCTCCCTCATTTTCAGTCTCAGTCTCGTTGTCAATCAGAGTCACCAGCCGTGATGGTGGTGCAGAGTCCGTCGCAGCCGAAGTCCCCACAACATTTGATGGTTTTGCCCGTCGGAACACAATCGCCTCATCCTGTGGCTGTGAGAAAGCCAGATTCTCCAAAGTCACGATCAAGGTCTGTAGAAACAAAAGATGCTACTCCAAAGAAACAAAAACAGTGCAACTGTAAACACTCACGCTGCTTAAAGCTGTACTGTGAGTGCTTTGCATCTGGAATATACTGTGATGGTTGCAATTGTGCAAATTGCTATAACAATGTCGAGAATGAAGTTTCTAGGAGAGAAGCAGTTGAAACTACTTTAGAACGTAATCCAAATGCATTCCGACCAAAGATAGCTAGCAGCCCGCATGGACCACGAAAAAGCAGGGATGAGATTGGAGAGGTTGTAATGCGGGGAAAGCACTACAAAGGATGCCATTGCAAGAAATCAAGTTGCTTAAAGAAGTATTGTGAGTGTTTTCAGGCCAATATTCTCTGCTCTGAAAACTGCAAGTGCATGGACTGTAAGAATTTTGAAGGAAGTGACGAGAGACAAGCACTTCTCCATGGTGACCATGTCAACAACATGGCTTATATTCAGCAGGCAGCTAATGCTGCAATAACTGGAGCTATTGGATCCTCTGGTTATGCTTGCCTTTCCACTTCACAGAAAAGAAAAGGCCCAGAGCTTTGCTTTGGCCCTACAGGGAAGGATACCCCCTGCAACAGCATAGCACAATTTCATCAGGCTAATAATATATTGTCTTCTGGCGCATCTACGTCATCTCCCCTCCCTGTTGCTCATGTTGGCAGCCCTGCAGCACCGGGACCTTCAAAGTTTTCATTCAGGTCCTTATTGGCAGACCTCATCCAGATGAACGACTTGAAGGAGCTTTGCTCAGTTTTAGTGGTGTTATCAAGCGAAGCTTCCAAGAATATAGCAGAACAAAGAATTGCTGAGAAGCAGATAAATGATCCACTGCAGATTTCACGTGCATCAACTGGAGATAGGTCACAGGACCAGGAAGCAGATGTGAAAGCCGCAGATGTTGAATGTGGAAGTTTAAACCAAGGTGATAGAATTGTACATCATAATTCCAATTCAGATAGTTCGGACACAACAACGGCAAGGCCGATGTCCCCTGGAACTTTAGCTTTAATGTGTGACGAACAGGATACCATGTTCACGGGAGCTGCTCTAGCCCATGGGTTGGCAGGCCATGGTTGCAACACATCATCACATATGCTTGATAAGTCTGTATCAGAAGTCTACATGGAGCAGGAACGGATTGTTTTGACAAAGTTTCGAGATTGTCTTAATAAACTCATCACTCCTGGAGAGATAAAAGAAACAAATTCAGTAGAAGCGAGGAATGAAAATCACAGCAAGAATTCCACCTCAAACAGTGGATACCGACAGAGAATTATTAGCAATGGGGTGGTAAAAAATGTCGCTCTCTCGGCACCCAGAATACCACCGATCGATGCTGCAGCTCATCATACTAGTAATAAAATTCCACCCCTACCTGAAAATGGGAAAGAGTAA 1719 44.74 MDDLPPQNAQTGSEEPDSVVAFDVTAKKLVRQLDFAEFGGAVLPELPHFQSQSRCQSESPAVMVVQSPSQPKSPQHLMVLPVGTQSPHPVAVRKPDSPKSRSRSVETKDATPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCANCYNNVENEVSRREAVETTLERNPNAFRPKIASSPHGPRKSRDEIGEVVMRGKHYKGCHCKKSSCLKKYCECFQANILCSENCKCMDCKNFEGSDERQALLHGDHVNNMAYIQQAANAAITGAIGSSGYACLSTSQKRKGPELCFGPTGKDTPCNSIAQFHQANNILSSGASTSSPLPVAHVGSPAAPGPSKFSFRSLLADLIQMNDLKELCSVLVVLSSEASKNIAEQRIAEKQINDPLQISRASTGDRSQDQEADVKAADVECGSLNQGDRIVHHNSNSDSSDTTTARPMSPGTLALMCDEQDTMFTGAALAHGLAGHGCNTSSHMLDKSVSEVYMEQERIVLTKFRDCLNKLITPGEIKETNSVEARNENHSKNSTSNSGYRQRIISNGVVKNVALSAPRIPPIDAAAHHTSNKIPPLPENGKE 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2700853 2706592 - Carg12207-RA Car11g00499 156452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00499 572 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 115 150 IPR005172 -
Car11g00499 572 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 201 235 IPR005172 -
Car11g00499 572 MobiDBLite consensus disorder prediction 66 108 - -
Car11g00499 572 MobiDBLite consensus disorder prediction 417 435 - -
Car11g00499 572 ProSiteProfiles CRC domain profile. 114 238 IPR005172 -
Car11g00499 572 MobiDBLite consensus disorder prediction 94 108 - -
Car11g00499 572 MobiDBLite consensus disorder prediction 168 187 - -
Car11g00499 572 MobiDBLite consensus disorder prediction 553 572 - -
Car11g00499 572 MobiDBLite consensus disorder prediction 416 435 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g01259 Car11g00499 CCT
Car11g00499 Car12g01226 CCT
Car05g01259 Car11g00499 ECH
Car11g00499 Car12g01226 ECH
Car10g00582 Car11g00499 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00499 Car-Chr11:2700853 Car17g00197 Car-Chr17:1181670 1.40E-31 dispersed
Car10g00582 Car-Chr10:2937435 Car11g00499 Car-Chr11:2700853 0 wgd
Car11g00499 Car-Chr11:2700853 Car12g01226 Car-Chr12:11661240 0 wgd
Car11g00499 Car-Chr11:2700853 Car05g01259 Car-Chr5:11732054 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4268 PF03638 TCR 5.30E-12 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00499 - - csv:101222405 860.136