Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car11g00535 | ATGGGGAGAGCCACCAGATGGCTGAAGAACTTGTTTGGGATTAAGAAAGAAAAACAACCCACCATGGAAAATTCCACCTCCGCCTTCATGAAGGATAACAACCCCACTTCTAATTTCGTCGGAGACGCCCAACTCTGCAACAATCCGGCTACAATACCGCCCAATTTATCCGCCGCTGAGGCCGCTTGGCTCAAATCCTTCTACTCCGAAACAGAGAAGGAACAGAGCAAGCACGCTATAGCAGTCGCTGCAGCCACTGCTGCTGCTGCTGATGCTGCGGTTGCTGCAGCACAAGCTGCTGTGGCTGTCGTCCGGCTCACTAGCCATGGGCGAGGTACTATGTTCGGTGGCGGCCGAGAGAGATGGGCCTCTGTCAAGATTCAAACTTGCTTCAGAGGGTTTCTGGCGAGAAAAGCACTGAGAGCGCTTAAAGGACTGGTGAAATTACAGGCGCTTGTGAGAGGATATTTGATTCGTAAACAAGCAACGGCAACTCTTCATAGTATGCAAGCTTTAATCAGAGCTCAGGCCACCGTTCGATCTCAGAGAACTCGCAGATTTGAACTCCAAGCTCGAAAATCTACGGAGCGGTTTGACGACACAAGGAGTGAGCACACAGCTTCAGTACACAGCAGAAGGCTTTCATCTTCTTTTGACAACACACCATTTACAGCGCTTGAAGAAAGCCCCAAAATCGTTGAAATGGACACCGGCCGACCAAAATCCTGGTCACGCCGGACGAACACGTCGGCGTCGGAATTTGGCGACGACCCATTTCATCAAACGTTGTCGTCTCCACTCCCCTGTCGAACTCCGTCGCGTTTGCAGATTCCTGATTGCCGGCATGATTCCGACTGGGGTCTCACTGGCGACGAGTGCCGTTTGATCTCGACAGCGCAGAGCACTCCACGATTCGTCAGCTCCGGCAGATCCAATGGCCCTCCGACGCCAGCGAAGAGCATGTGTGCTGATAATTTCTTCAGAGGGTACTTGAATTTCCCAAATTACATGGCGAATACTCAATCGTTTATGGCGAAATTGAGGTCCCAGAGTGCTCCGAAACAGAGGCCGGAGCCGGGCTCAAAGAAGAGGCTTTCGTTGAATGAATTAATGGAATCGAGAAGCAGCCTTAGTGGGGTTCGAATGCAGAGGTCTTGTTCGCAGGTACAAGAAGCCATTAATTTCAAAAATGCTGTGATGAGCAAACTGGATAGACCATCGGAATTCAACAACTTGCAGAGAAGATCATGA | 1251 | 50.68 | MGRATRWLKNLFGIKKEKQPTMENSTSAFMKDNNPTSNFVGDAQLCNNPATIPPNLSAAEAAWLKSFYSETEKEQSKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFGGGRERWASVKIQTCFRGFLARKALRALKGLVKLQALVRGYLIRKQATATLHSMQALIRAQATVRSQRTRRFELQARKSTERFDDTRSEHTASVHSRRLSSSFDNTPFTALEESPKIVEMDTGRPKSWSRRTNTSASEFGDDPFHQTLSSPLPCRTPSRLQIPDCRHDSDWGLTGDECRLISTAQSTPRFVSSGRSNGPPTPAKSMCADNFFRGYLNFPNYMANTQSFMAKLRSQSAPKQRPEPGSKKRLSLNELMESRSSLSGVRMQRSCSQVQEAINFKNAVMSKLDRPSEFNNLQRRS | 416 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 2896851 | 2898325 | + | Carg12243-RA | Car11g00535 | 156488 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car11g00535 | 416 | Pfam | Protein of unknown function (DUF4005) | 305 | 381 | IPR025064 | - | |
| Car11g00535 | 416 | MobiDBLite | consensus disorder prediction | 235 | 267 | - | - | |
| Car11g00535 | 416 | MobiDBLite | consensus disorder prediction | 193 | 214 | - | - | |
| Car11g00535 | 416 | Pfam | IQ calmodulin-binding motif | 147 | 161 | IPR000048 | GO:0005515 | |
| Car11g00535 | 416 | Pfam | IQ calmodulin-binding motif | 121 | 141 | IPR000048 | GO:0005515 | |
| Car11g00535 | 416 | MobiDBLite | consensus disorder prediction | 193 | 209 | - | - | |
| Car11g00535 | 416 | MobiDBLite | consensus disorder prediction | 242 | 267 | - | - | |
| Car11g00535 | 416 | ProSiteProfiles | IQ motif profile. | 144 | 171 | IPR000048 | GO:0005515 | |
| Car11g00535 | 416 | ProSiteProfiles | IQ motif profile. | 120 | 148 | IPR000048 | GO:0005515 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car10g00607 | Car11g00535 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car05g01123 | Car-Chr5:10760097 | Car11g00535 | Car-Chr11:2896851 | 5.37E-23 | dispersed | |
| Car11g00535 | Car-Chr11:2896851 | Car14g01570 | Car-Chr14:12821341 | 5.41E-40 | dispersed | |
| Car01g00077 | Car-Chr1:426983 | Car11g00535 | Car-Chr11:2896851 | 6.13E-70 | wgd | |
| Car10g00607 | Car-Chr10:3093336 | Car11g00535 | Car-Chr11:2896851 | 0 | wgd | |
| Car11g00535 | Car-Chr11:2896851 | Car14g01140 | Car-Chr14:10044241 | 3.82E-82 | wgd | |
| Car11g00535 | Car-Chr11:2896851 | Car17g00704 | Car-Chr17:6456875 | 1.14E-114 | wgd | |
| Car11g00535 | Car-Chr11:2896851 | Car08g00629 | Car-Chr8:4031350 | 2.49E-122 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car11g00535 | - | - | cmax:111495188 | 731.865 |