Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00553 ATGGTGATCGGCCAACGCCACCGACCTGGTCCGTTGCTTCATATCACTCCATTGACGATACCGGAGGAACCTGCGAACGAGACGCGGCTTCCTTTTCCTCTGAGTGGAATCTCGGTGAGTTCTGATGACAATGGTAACGGCGGCGATTATTCTCCCTATCATTTGCAGGAAGTCCTTGCGGCATTTCAGCGATATCTGCCTTCGACGAGTGAGTCGGAGATTGAATCTGATTTGGAGTTGTCCGGCCGGGAATCGGATGTTCCGGTGGATGCTTACTCTTGCGATCAATTTAGAATATTCGAGTTCAAGGTGAGGAAGTGTACGCGTGGACGGTCTCATGATTGGACGGAGTGCCCGTTTGCTCATCCTGGCGAGAAGGCTCGCCGGAGAGATCCGAGGAAGTATCATTACTCCGGTACGGCGTGCCCCGACTTTCGAAAAGGTAGCTGCAAAAAAGGCGAGTCGTGCGAGTTTGCGCATGGTGTATTTGAATGTTGGCTCCATCCTGCACGTTACAGGACTCAGCCGTGCAAGGACGGGATCAACTGTCGTAGGAGAGTTTGTTTCTTCGCCCATACTCCCGAGCAACTTAGGGTTTTGCCTCAGCAGAGTCCGAAAGACGCGAATTCGCCTGACTCATATGAAGAATCTCCTCTGCGGCAGTGTTTGGATGGAACCTGTGCGAAATCGCTTCCGTTTCTGTCTTCTCCGGTGTCCGTTTCGCCGTCGGCGACTCCAGTTGACTCTCCACCGATATCGCCGATGACTAGGTCGCTCGCCCGGTCTCTTGGCTCAAGTTCCGTCAATGAAATTGTCGCATCCCTCCACATGCATCTAAGCAAGGTGAATTCTCTACCATCTTCCTGGAATGTTCAAATTGGATCTCCCGGTTATCCGTCTCGAATCCGCCCTGGATTTTGTAGCCTTCCAACTACACCAACTCAGCCTCCAACAGGTCCAGGAGTTGGATTGCTAGACTTCACGGACCATGGATTCGTGGAGGAACCGGCAATGGAGCGAGTCGAATCGGGAAGGGAGCTGAGGGCAAAGATGCTGCAGAAACTGAGTGAGGAAAATTCTTTGGACTTGGCTGATTCAGGCCCTTCAGACTGCACACCGGACGTTGAATGGGTATCAGATCTGGTAAACTGA 1152 52.34 MVIGQRHRPGPLLHITPLTIPEEPANETRLPFPLSGISVSSDDNGNGGDYSPYHLQEVLAAFQRYLPSTSESEIESDLELSGRESDVPVDAYSCDQFRIFEFKVRKCTRGRSHDWTECPFAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGESCEFAHGVFECWLHPARYRTQPCKDGINCRRRVCFFAHTPEQLRVLPQQSPKDANSPDSYEESPLRQCLDGTCAKSLPFLSSPVSVSPSATPVDSPPISPMTRSLARSLGSSSVNEIVASLHMHLSKVNSLPSSWNVQIGSPGYPSRIRPGFCSLPTTPTQPPTGPGVGLLDFTDHGFVEEPAMERVESGRELRAKMLQKLSEENSLDLADSGPSDCTPDVEWVSDLVN 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2977852 2979003 - Carg12262-RA Car11g00553 156506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00553 383 MobiDBLite consensus disorder prediction 237 258 - -
Car11g00553 383 ProSiteProfiles Zinc finger C3H1-type profile. 137 163 IPR000571 GO:0046872
Car11g00553 383 MobiDBLite consensus disorder prediction 199 218 - -
Car11g00553 383 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 161 IPR000571 GO:0046872
Car11g00553 383 MobiDBLite consensus disorder prediction 199 216 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00553 Car-Chr11:2977852 Car12g01256 Car-Chr12:11829776 1.04E-153 dispersed
Car01g01366 Car-Chr1:12022257 Car11g00553 Car-Chr11:2977852 1.49E-98 wgd
Car10g00622 Car-Chr10:3158837 Car11g00553 Car-Chr11:2977852 0 wgd
Car11g00553 Car-Chr11:2977852 Car12g00569 Car-Chr12:3813502 1.13E-79 wgd
Car11g00553 Car-Chr11:2977852 Car09g00274 Car-Chr9:1495919 1.79E-107 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4273 PF00642 zf-CCCH 4.40E-06 CL0537 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00553 - - csv:101204432 645.966