Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00699 ATGGCTCTGACCATAGTTGCATTTAACAATGGAAACTTTAATATGAAGACCCTGCTGGAAGTTCTGAGTCTTGGTCCGACGTTTGTCGTTATGAAGTTTATTGAGAGTGTTCTAGACATCCTAATGATGTATGGTGCATACTCTACCTCAAGGCGCCTTGCTATTTCTCGAATTTTTCTTCGTTTCCTTTGGTTCAGTATTGCTTCTGCTTCGATAACGTTTCTTTATGTGAAAGCTCTTCAGGAGGGTAGTAACCCAAATGCAGAAAGGGTGATGTTTAGACTATATGTAATCGTGATTGGAATATATGGTGGTGTGCAGCTTTGCCTCAGTATTCTGATGTGTGTACCTGCTTTCCATCTTCTAACAAATCAATGTGATCGGTGGCCTCTTGTTCGCTTTATCATGTGGATGCAACAGGAACGGTACTATGTTGGACGTGGGATGTATGAGAAGACTACTGATTTTATCAAGTACATGCTCTTGTGGGTAATCATTCTGGGTGGAAAATTCGCATTTGCCTATTTCCTTCAGATAAAGCCTCTTGTTAAACCTACCAGGCTTATTGTGAACATGAAAGATCTAAAATATTCGTGGCATGACTTTGTGTCTAAGAATAATCATAGTGCTTTGACGGTTCTTAGCTTATGGGCCCCAGTGTTTGCTATTTACATCGTGGACCTTCATGTGTTCTATACCGTTGTATCTGCTATTTGGAGTTTATTAATTGGTGCAAGAGATCGTCTTGGAGAGATTAGATCATTGGAATCGCTTCGTATGCTGTTTGAGCAGTTTCCCGGAGCCTTTATGAACACTTTACATGCTACTCCCCGGGACAGGATTTCAAATCAGTCTTCAACTCCGGTGAGTTCCCTATTGCCTCCTTGCTTCAGAAATATGCTTGATTTACCCTGGGAATTGGAGTTGCTTCAAATGCCTAAAAACAAGGGTAATCTTCCCCTGGTTCAGTGGCCCCTTTTTCTTCTTGCTAGCAAGATATTTCTAGCAACGGATATTGCTGTTGAGAGACGGGATTCACAAGACGAGTTGTGGGAGCGTATTTCAAGAGATGACTATATGAAATATGCAGTACAGGAATGTTACCACGCAATTAAGCTCATCTTAACAGAATTACTGGTTGGGGAAGGAAGGACGTGGGTTGAAAGGGTATTTGAAGACATTCAAGCTAGTATAGCAAACAATTCCATTCAAAATGACTTCCAGCTAAATAAGCTACCACTTGTGATTACAAGAGTAACTGCTCTGACGGGTATTCTGAAAGAGCCAGAAACCCCGGAGCTCGAAATAGGTGCTGTTAAGGCACTTCAAGATTTGTATGATGTTGTGCACCATGATATCCTTTTTGGCGACAAGAGGGGGCATTATGAAACATGGAACATATTGGTAAAAGCTAGAAATGAAGGTCGCCTGTTTACAAGGTTAAATTGGCCCAAAGATCCAGAATTGAAGTCTCAAGTGAAAAGATTACATTCCCTGTTAACCATAAAAGATTCAGCTTCAAATATTCCAGTTAATCTTGAGGCCAGACGTAGACTGCAATTCTTTACAAATTCACTTTTCATGGCTATGCCAAAGCCAAAACCTGTTCATGAATGGAAGAACTTTCTTGCTCGAATTGGCCGAGATGAGAATGAAGTTGACCCAGAATCGTTTGATAACCCTAATGACATCCTTGCACTACGATTTTGGGCCTCTTATCGAGGACAGACATTAGCAAGAACTGTTCGTGGAATGATGTACTATAGGAAAGCTCTTATGCTGCAGACTTATTTAGAAAGAGGAACTTACGGAGCACGTGCACAGGCAGATCTTAAATTTACGTATGTTGTGACCTGTCAGATATATGGAAGACAAAGAGAACAACAAAAACCTGAGGCTTCTGATATTGCATTGCTTATGCAAAGAAATGAAGCTCTTCGTGTTGCCTACATTGAAGATATTGAAACCCAAAAGGATGGTATGGTGCAGAAAGAATTTTACTCAAAGCTGGTGAAGGCTGATATCAATGGAAAAGATAAGGAGATTTATTCCATCAAATTGCCTGGAGATCCAAAGTTGGGTGAAGGAAAGCCTGAGAATCAAAATCATGCTGTTATTTTTACTCGTGGAAATGCTGTTCAGACAATTGATATGAATCAGGATAATTACTTTGAAGAAGCATTGAAAATGAGAAATCTTCTTGAGGAATTTGCTAAACATCATGGTATTCGTCCTCCTACCATACTGGGTGTCAGGGAACATATATTTACGGGCAGTGTTTCATCTCTGGCTTCATTCATGTCAAATCAAGAAGCTATTTTTGTGACTCTTGGTCAGCGTGTTCTGGCAAATCCCTTGAAAGTTCGTATGCATTATGGCCATCCCGATGTTTTTGATAGGGTTTTCCATCTAACACGAGGTGGCTTCAGCAAGGCCTCCCGTGCTATCAACATTAGTGAAGATATCTATGCAGGATTTAATACAACTTTGCGACAAGGAAACGTTACCCATCATGAGTATATTCAGGTCGGTAAAGGACGAGATGTTGGTCTTAATCAGATTGCTCTTTTCGAAGGGAAGATTGCTGGTGGTAATGGAGAACAAGTTCTTAGCCGTGATGTATACAGACTTGGCCAACTGTTTGATTTTTTCCGGATGATGTCATTCTATTTTACGACTGTTGGCTACTACTTTTGTACTATGTTAACGGTGTTGACTGTGTACATTTTTCTCTATGGGAAAGCATATTTGGCACTGTCTGGAGTTAGCGAGGGCAAGGAAGATAGAGCCCATATTACAGATACTGCTGCATTGTCAGCTGCTTTGAATAAACAGTTCCTTATCCAAAATGGTATCTTCACTGCAATGCCGATGATCTTGGGATTTATTTTGGAGAAAGGTTTCTTCAGGGCATATGGGTTCTCCTGGATTGTGTTAGCTGGGCTTATAGTTCTTTTCAAGGTTTTTACCTTGAGCCAGACGATGACTGTCAATTTTCAGCTTTTGTCGCGTTTTATCCAAGGTCTATCTTTCCTTTTGACGCTGGCTGGCATGGCCGTTGCGGTTGCTATTACAGACTTGTCACTGCCTGATATATTCGCTTGCATCTTGGCATTTGTACCTACAGGATGGGGCATTCTTTCTATTGCAGCAGCTTGGAAACCTGTTATAAAGAAACTGGGATTCTGGAAATCCATCTGCTCAATTGCTCGTCTGTATGATGCCGGGATGGGGATGCTCGTCTTTATCCCCATTGCATTTCTTTCGTGGTTTCCATTTGTATCGACATTCCAAACTCGTCTTATGTTCAACCAGGCTTTCAGTCGAGGGCTTAAGGTCTCACTAATTCTTGCTGGAAACAATCCCAACACTGCCCTATGA 3381 41.14 MALTIVAFNNGNFNMKTLLEVLSLGPTFVVMKFIESVLDILMMYGAYSTSRRLAISRIFLRFLWFSIASASITFLYVKALQEGSNPNAERVMFRLYVIVIGIYGGVQLCLSILMCVPAFHLLTNQCDRWPLVRFIMWMQQERYYVGRGMYEKTTDFIKYMLLWVIILGGKFAFAYFLQIKPLVKPTRLIVNMKDLKYSWHDFVSKNNHSALTVLSLWAPVFAIYIVDLHVFYTVVSAIWSLLIGARDRLGEIRSLESLRMLFEQFPGAFMNTLHATPRDRISNQSSTPVSSLLPPCFRNMLDLPWELELLQMPKNKGNLPLVQWPLFLLASKIFLATDIAVERRDSQDELWERISRDDYMKYAVQECYHAIKLILTELLVGEGRTWVERVFEDIQASIANNSIQNDFQLNKLPLVITRVTALTGILKEPETPELEIGAVKALQDLYDVVHHDILFGDKRGHYETWNILVKARNEGRLFTRLNWPKDPELKSQVKRLHSLLTIKDSASNIPVNLEARRRLQFFTNSLFMAMPKPKPVHEWKNFLARIGRDENEVDPESFDNPNDILALRFWASYRGQTLARTVRGMMYYRKALMLQTYLERGTYGARAQADLKFTYVVTCQIYGRQREQQKPEASDIALLMQRNEALRVAYIEDIETQKDGMVQKEFYSKLVKADINGKDKEIYSIKLPGDPKLGEGKPENQNHAVIFTRGNAVQTIDMNQDNYFEEALKMRNLLEEFAKHHGIRPPTILGVREHIFTGSVSSLASFMSNQEAIFVTLGQRVLANPLKVRMHYGHPDVFDRVFHLTRGGFSKASRAINISEDIYAGFNTTLRQGNVTHHEYIQVGKGRDVGLNQIALFEGKIAGGNGEQVLSRDVYRLGQLFDFFRMMSFYFTTVGYYFCTMLTVLTVYIFLYGKAYLALSGVSEGKEDRAHITDTAALSAALNKQFLIQNGIFTAMPMILGFILEKGFFRAYGFSWIVLAGLIVLFKVFTLSQTMTVNFQLLSRFIQGLSFLLTLAGMAVAVAITDLSLPDIFACILAFVPTGWGILSIAAAWKPVIKKLGFWKSICSIARLYDAGMGMLVFIPIAFLSWFPFVSTFQTRLMFNQAFSRGLKVSLILAGNNPNTAL 1126
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3960294 3979913 - Carg17998-RA Car11g00699 156652

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00699 1126 Pfam 1,3-beta-glucan synthase component 560 994 IPR003440 GO:0000148|GO:0003843|GO:0006075|GO:0016020
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00699 K11000 CALS; callose synthase [EC:2.4.1.-] - csv:101216435 1672.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00699 Car-Chr11:3960294 Car10g00867 Car-Chr10:5161085 1.63E-39 dispersed
Car11g00696 Car-Chr11:3912180 Car11g00699 Car-Chr11:3960294 5.93E-82 proximal
Car11g00699 Car-Chr11:3960294 Car11g00702 Car-Chr11:3998099 9.53E-40 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car10g00420 . 1 1031 Cell Wall Biosynthesis AT5G17420 84.4 0.0e+00 1821.6
Car02g00866 . 647 1650 Cell Wall Biosynthesis AT5G17420 81.9 0.0e+00 1749.9
Car04g01268 . 1 1082 Cell Wall Biosynthesis AT5G17420 65.8 0.0e+00 1435.2
Car03g00961 CST 1 1081 Cell Wall Biosynthesis AT5G17420 64.5 0.0e+00 1428.3
Car01g00819 . 1 1087 Cell Wall Biosynthesis AT5G17420 63.1 0.0e+00 1416.0
Car03g00067 . 17 1077 Cell Wall Biosynthesis AT5G17420 66.2 0.0e+00 1413.7
Car09g01056 . 1 1087 Cell Wall Biosynthesis AT5G17420 62.4 0.0e+00 1405.2
Car07g00766 CST 1 1103 Cell Wall Biosynthesis AT5G17420 62.2 0.0e+00 1379.4
Car07g01266 . 20 848 Cell Wall Biosynthesis AT5G17420 78.2 0.0e+00 1354.7
Car13g00472 . 5 979 Cell Wall Biosynthesis AT5G17420 61.9 0.0e+00 1275.0
Car18g00403 . 5 978 Cell Wall Biosynthesis AT5G17420 61.5 0.0e+00 1273.8
Car08g00439 . 9 615 Cell Wall Biosynthesis AT5G17420 61.4 6.7e-212 734.9
Car17g01273 . 33 401 Cell Wall Biosynthesis AT5G17420 69.4 3.5e-152 536.6
Car09g00410 . 1 102 Cell Wall Biosynthesis AT5G17420 68.6 5.8e-38 157.1
Car11g00044 . 1 1902 Cell Wall Biosynthesis AT3G07160 61.5 0.0e+00 2335.1
Car11g00696 . 25 1410 Cell Wall Biosynthesis AT3G07160 77.1 0.0e+00 2156.3
Car11g00699 . 2 1126 Cell Wall Biosynthesis AT3G07160 58.8 0.0e+00 1509.6
Car02g00448 . 5 1095 Cell Wall Biosynthesis AT3G07160 52.7 0.0e+00 1085.1
Car11g00701 . 1 226 Cell Wall Biosynthesis AT3G07160 71.6 1.8e-93 342.4
Car11g00697 . 2 224 Cell Wall Biosynthesis AT3G07160 72.1 3.1e-93 341.7
Car11g00698 . 1 153 Cell Wall Biosynthesis AT3G07160 78.4 4.2e-58 224.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000469 1 5 2 3 3 6 6 7 6 2 5 7 3 2 2 4 6 2 4 7 2 2 2 5 6 5 2 3 4 3 117
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g00699 Car_Chr11 FPKM 40.446507 45.065525 30.212698 31.982491 22.924879 23.977015 24.244631 22.310776 24.299042 23.726379