Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00706 ATGGAAGACGAAGCATCCTCCACCTTCATTTCCTTCACTAAGTCCCCTCTCCTCATAGATGAGGTTTCAGATTCTAATTTCTCAGATTATGCCATACCTGATGCCAAGCGGATGAGATTAGACCATGATCTTAATGATGTAGCCACCGTCGAGAAATTTAAAGGTGTAGTGCCGCAACAGAATGGCCGTTGGGGAGCGCAGATCTATGCGAACCACCAGAGAATCTGGCTCGGTACCTTCAAATCGGAGAAAGACGCTGCCATGGCTTATGACAGTGCCGCTATCAAGCTTCGCACCAGAGACTCTCACCGGAATTTCCCATGGACTCGCCTATCAATCGAGGAGCCGAATTTTCAAAGCAAATTCTCCATAGACGCCGTTCTCAGCATGATCAAAGACGGATCGTATTCCTCGAAATTTTCCGCCTACTTACGAACGAAGTCTCAAATTTGCGACTCGAATATACAGAATCTCCAAACTATTGAAAATGGCGACCGCGATGGCCATTTCTCTTGCAGCCATCTATTCCAGAAGGAATTAACACCAAGCGACGTCGGAAAGCTCAATCGACTCGTAATCCCTAAAAAATACGCAGTGAAGCACTTTCCGTACATCAGCGAGAGCGCAGAGGAGAATAGCGACGATATCGAAATCGTCTTCTACGATACATCAATGAAGACATGGAAGTTCCGATACTGTTACTGGAGGAGCAGCCAAAGCTTCGTCTTCACCAGAGGCTGGAATCGATTCGTGAAAGAGAAAAAGCTGAAGGCGAACGACATCATCACGTTTTACACATACGAAAGCTGCGGAAGAGACAAAAATGGCGGAACATTGATTTTCATTGACGTAATCTACAAGAAACCGGAAGATGACCGGAGCGAGAGTAGTTGCTTAGCGGCGGAGAGAGAGAGTATCAAGAACGAACAATTGCAGAGAGAATTAGGGCTTGATCGGGAGGACTGTGAGGGGAAGAAGAAGAAGAAGAAGAAGGAGGAGGAGGAGATTTTAAACCGCCCGATTGATCTTGTTGCAGTATCCATTGTCGCGCTCTCTCCGTCGCCAAGAAATATAGCCATCTTTTATAAGATGTCGACAACCGGAGCCTATTATCTTCCGATTTGCACACTGAGAAACAGCAAGCTCTCTTCTGCTAAACTTAGAAATGTCTACAATGTCTCCTCTTTGAAACACTTTCAGCTGAATTCCATCACTTTATCTTCTACACGAACTGGGAAGCTTGCAACTAGTGCTATGTCTGGATCTAATGAACACCAACCCGTCTCTGGGTTGCCGATTGATTTGAAAGGTAAGCGGGCATTCATTGCTGGTGTAGCTGATGACAATGGTTATGGTTGGGCAATAGCAAAATCTCTTGCTGCTGCCGGAGCTGAAATTATTGTTGGTACGTGGGTGCGTGCTTTAAACATCTTCGAAACCAACTTGCAACGTGGAAAGTTCGATAAATCTCGATCATTGCGAGATGGATTGTTAATGGAGTTTGCGAAAATATATCCCCTGGATGTAGATTTTGACAATCTTGAGGATGTTCCAAAAAATATAAAAACAAAGAAGCAGTATGCAGTTTGCAAAAATTGGACAGTTCAGGAAGTAGCAGAATCAGTTAAGAAGGATTTTGGAACCATTGACATCCTTGTGCATTCACTTGCAAATGGACCGGAGGGAAGTAAACCTCTCTTAGAGACCTCCAGGAAAGGCGGTTCGTCGATCTCTCTGACATACATTGTTTCCAAAAGGATCATTCCTGGATATGGGGGAGGTATGAGTTCAGCAAAAGCTGCACTGGAGAGTTACTTACGAGTGCTTGCTTTCGAGGTGGGTAGAAAAAACAAGGTCAGAGTGAACGCCATATCCGCTGGTCCTCTAAGAAGCCGGGCATCGAAAGCAGTTGAATACATCGATTCGATGATAGACTACTCACTAGCAAATGCACCTCTGCAGAAACCAATATCTGCAGAGGAGGTGGGGAATGCAGCTGCCTTCTTGGCATCTCCTTTAGCGTCTGCCATAACTGGTTCTGTTATCTGTGTCGACAATGGTTTGAACACCATGGGAGTTGGAGTCGATAGCCCGACACTCAAAGGACTGTATCTTCTAAACCCCAACTGA 2130 45.31 MEDEASSTFISFTKSPLLIDEVSDSNFSDYAIPDAKRMRLDHDLNDVATVEKFKGVVPQQNGRWGAQIYANHQRIWLGTFKSEKDAAMAYDSAAIKLRTRDSHRNFPWTRLSIEEPNFQSKFSIDAVLSMIKDGSYSSKFSAYLRTKSQICDSNIQNLQTIENGDRDGHFSCSHLFQKELTPSDVGKLNRLVIPKKYAVKHFPYISESAEENSDDIEIVFYDTSMKTWKFRYCYWRSSQSFVFTRGWNRFVKEKKLKANDIITFYTYESCGRDKNGGTLIFIDVIYKKPEDDRSESSCLAAERESIKNEQLQRELGLDREDCEGKKKKKKKEEEEILNRPIDLVAVSIVALSPSPRNIAIFYKMSTTGAYYLPICTLRNSKLSSAKLRNVYNVSSLKHFQLNSITLSSTRTGKLATSAMSGSNEHQPVSGLPIDLKGKRAFIAGVADDNGYGWAIAKSLAAAGAEIIVGTWVRALNIFETNLQRGKFDKSRSLRDGLLMEFAKIYPLDVDFDNLEDVPKNIKTKKQYAVCKNWTVQEVAESVKKDFGTIDILVHSLANGPEGSKPLLETSRKGGSSISLTYIVSKRIIPGYGGGMSSAKAALESYLRVLAFEVGRKNKVRVNAISAGPLRSRASKAVEYIDSMIDYSLANAPLQKPISAEEVGNAAAFLASPLASAITGSVICVDNGLNTMGVGVDSPTLKGLYLLNPN 709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4034084 4039488 + Carg17991-RA Car11g00706 156659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00706 709 Pfam B3 DNA binding domain 176 267 IPR003340 GO:0003677
Car11g00706 709 ProSiteProfiles B3 DNA-binding domain profile. 176 288 IPR003340 GO:0003677
Car11g00706 709 Pfam AP2 domain 52 99 IPR001471 GO:0003700|GO:0006355
Car11g00706 709 ProSiteProfiles AP2/ERF domain profile. 52 107 IPR001471 GO:0003700|GO:0006355
Car11g00706 709 Pfam Enoyl-(Acyl carrier protein) reductase 568 689 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00849 Car-Chr2:6118793 Car11g00706 Car-Chr11:4034084 1.16E-52 dispersed
Car04g01569 Car-Chr4:9094245 Car11g00706 Car-Chr11:4034084 5.30E-51 dispersed
Car10g00440 Car-Chr10:2210128 Car11g00706 Car-Chr11:4034084 1.08E-97 dispersed
Car10g00593 Car-Chr10:2997062 Car11g00706 Car-Chr11:4034084 1.44E-06 dispersed
Car11g00706 Car-Chr11:4034084 Car18g00968 Car-Chr18:10229397 2.14E-51 dispersed
Car03g00211 Car-Chr3:3434797 Car11g00706 Car-Chr11:4034084 1.10E-06 transposed
Car11g00706 Car-Chr11:4034084 Car02g01008 Car-Chr2:7114513 2.04E-143 wgd
Car11g00706 Car-Chr11:4034084 Car20g00045 Car-Chr20:260643 1.18E-149 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4283 PF13561 adh_short_C2 4.00E-31 CL0063 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00706 K00208 K09287 csv:101219913 553.903