Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00707 ATGAAGCCTGTCAAACGGGAACCCGCCGCCAGTAGCCGCAGTAATCAGAGTAAAGGCGGCGACGCCGTCGATGCTGCGAATTTAAGAGATGTTAAGCGGGCGAGGGTTGCTCGGGAGAAAGAGAACATCGGTGAGGGCAACATGGCTGAAGCTGAAGAGGGTCAGCAAGGCTTGACGAAGCGGCGGGTTCTCCGGTCTCGGTATCTTGCGGTCATTCACGAGATTAGTGAAAGGAGAGAGGATTTGACGAAGGATTCGGACAAGTTCAATGTTATCATCAATGAAGTGGAAAAGTTGCACGAGCAAGTTCAGAAGCCAAGGGAACAAGTTGCAGATGCAGAAGCCTTGCAAGATATTGCAAACTCCCTCGTGACTTCTATTAAGTCGCAGTCAAATGAAGGTGTTACTCCATCAGATTTTGTGAGCTGTCTGCTCAAAGAATTTGCTAACATTGAAGGCGGTATAACATCCGAAGAAAACGATCCGATTTCTGTCAGTTGGAAAGATATTGGATTAAGCGTTTCGTCTATTTTCATGAATGGCCATGGATGCTGCACCATGCTTGGACCTATGAGCACTCAGTTGAAGCAGCGAAAGACTAATATTGCCCGGAAACGTTCAAGGCCTACTGAAAGTTCGAGACCTGCAGAGGTTGATGAAGATGGATCTGAAGAAAAAACGGATACAGATAAGAACATGAGCATCATGTTTGGAATTTTGAGGAGGAATAAAACCGTTAGACTTGAACATTTGATATTGAATAGAAACTCTTTTGCACAGACAGTAGAGAACTTATTTGCTCTCTCCTTTCTGGTCAAGGATGGTCGGGCCGAGATAACTATTGATAAAAATGGTTCTCATTTTGTATCTCCGAAGAATGCCCCGGCCCATAGTGCCATTATGTCACACGAAGTTAATTATAGTCACTTCGTATTCAGATTCGATTTTAAGGATTGGAAGTTGATGATGGATATAGTACCAGTTGGAGAGGAGTTGATGCCCCACAGGAACTTTCTAAATTCAGCACCCATGCCCCAAGAAGAAGCAACCACGGACGATTCTGAATCAGCGTCATTGCCTACCACGCCAATTCGAAAGCTGTCAAGAAATCGAGGTTTAGTTATGCAAACTGTTGTTGAGGATTCCCCTGATAATGACGCTCATTCAGGACCAACTGCAATGTTGAGGTGCAAGAAAAAGCTTAGTCAAGGTTAG 1215 44.77 MKPVKREPAASSRSNQSKGGDAVDAANLRDVKRARVAREKENIGEGNMAEAEEGQQGLTKRRVLRSRYLAVIHEISERREDLTKDSDKFNVIINEVEKLHEQVQKPREQVADAEALQDIANSLVTSIKSQSNEGVTPSDFVSCLLKEFANIEGGITSEENDPISVSWKDIGLSVSSIFMNGHGCCTMLGPMSTQLKQRKTNIARKRSRPTESSRPAEVDEDGSEEKTDTDKNMSIMFGILRRNKTVRLEHLILNRNSFAQTVENLFALSFLVKDGRAEITIDKNGSHFVSPKNAPAHSAIMSHEVNYSHFVFRFDFKDWKLMMDIVPVGEELMPHRNFLNSAPMPQEEATTDDSESASLPTTPIRKLSRNRGLVMQTVVEDSPDNDAHSGPTAMLRCKKKLSQG 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4039518 4042403 - Carg17990-RA Car11g00707 156660

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00707 404 MobiDBLite consensus disorder prediction 343 365 - -
Car11g00707 404 MobiDBLite consensus disorder prediction 204 228 - -
Car11g00707 404 MobiDBLite consensus disorder prediction 1 57 - -
Car11g00707 404 MobiDBLite consensus disorder prediction 198 228 - -
Car11g00707 404 MobiDBLite consensus disorder prediction 25 47 - -
Car11g00707 404 MobiDBLite consensus disorder prediction 340 404 - -
Car11g00707 404 Pfam Nse4 C-terminal 246 333 IPR014854 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00707 K22825 NSMCE4, NSE4; non-structural maintenance of chromosomes element 4 - csv:101220149 653.284
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00863 Car-Chr10:5141329 Car11g00707 Car-Chr11:4039518 5.65E-119 transposed
Car10g00862 Car-Chr10:5139693 Car11g00707 Car-Chr11:4039518 1.53E-125 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car11g00707 . 55 402 Non-SMC Element family AT1G51130 57.6 1.1e-104 377.5
Car10g00863 . 18 202 Non-SMC Element family AT1G51130 60.1 3.6e-52 203.0
Car11g00707 . 52 382 Non-SMC Element family AT3G20760 53.0 2.1e-89 326.6
Car10g00863 . 18 183 Non-SMC Element family AT3G20760 55.4 1.4e-42 171.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008652 0 2 0 0 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g00707 Car_Chr11 FPKM 16.880865 18.483189 63.214272 66.869743 2.009914 1.479451 1.774342 195.364868 188.392303 184.760483