Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00741 ATGTTTCAAGATGAAGGCACATCCTCCATAACTTCTTCCCCTCTCCAGTTCTTCACAATGATGTCTCTTTCACCTAAACTGGGCTCTCCATATCCATGGCTTAGAGAGCTAAAATCGGAGGAGAGGGGCTTGTATTTGATCCATTTGTTGCTTACTTGTGCTAACCATGTGGCTGTTGGTAGTCTTGACAATGCTAATCTTGCTCTTGATCAGATATCCCATCTTGCTTCTGCTGATGGCGATACAATGCAGCGGATAGCAGCGTATTTCGCCGAGGCTCTTGCCAATCGAATCCTTAAAACTTGGCCTGGCCTTTATAAGGCCTTTAACTCCACAAAGATACCTGTGGTTTCAGAGGAGATTCTTGTTAAAAAGCTGTTTTTTGAGGTGTTTCCATTCCTTAAGGTGGCTATTGTGCTTACTAATCAGGCTATTGTTGAAGCCATGGAAGGGGAAAAGATGATTCATATCATTGATCTCAATGCCAATGAAACTGCTCAATGGCTTGCACTTTTGCAGGTTTTGAGTGTCAGGCCTGAAGGGCCTCCCCATTTGAGAATCACTGGGGTTCATCAACAGAAACAGGTTCTGGATCGAATGGCTCGTCGGCTAACTGAAGAAGCTGAAAAGTTTGATATACCGTTTCGATTCGATTCGGTCGTCTGCCGATTAGAGGATCTTGATATGGAAAAGCTTCGTGTGAAAACAGGGGAGGCTCTGGCTATCAGCTCAGTTCTTCAGTTGCATACCCTTTTGGCAGCTGATAATGAAGTCCTGCAAAAGTCATCTCCATTAGCAGGAAAGAGTGCCAATGGAGTTCATTACTCGAGATACCAGCACCCGAACCAAACCAACTTGAGTGAGTTACTCGAAAAGGATTCGGTTAACGGGTGCAGTCCGAGTCCCGATTCGGTATCTTCATCAGCTTTATCTCAAGCCAACGTGACGAAGATCGACAGCTTCTTGAATGGATTGTGGAGTTTGACGCCGAAGGTGATGGTCGTAACCGAACAAGATTCTAACCATAATGGTGCAACACTTATGGAGAGATCACTAGAGGCTCTCCACACATATGCAGCAATCTTTGATTGCTTGGAATCTAATATGTCAAGAACATCCCTAGAGAGGTTGAAGTTGGAAAAGATGCTATTTGGGGAAGAGATTAAGAACATTATAGCTTGTGAGGGAGGTGAAAGGAAGGAACGACACGAGAAGTGTGAGAAATGGAGTCAACGGTTCGATCTCGCGGGGTTCAGGCATGTGCCTTTGAGTTATTATGGCATGCTGCAGGCAAGGAGCCTGCTGCAGGGGTATGGTTGTGATGGTTATAGGCTGAAGGAAGAGAATGGTTGTGTTATGATTTGTTGGCAAGATCGTCCGTTGTTCTCGGTATCGGCTTGGAGGTGTTGTAAGTAG 1416 45.2 MFQDEGTSSITSSPLQFFTMMSLSPKLGSPYPWLRELKSEERGLYLIHLLLTCANHVAVGSLDNANLALDQISHLASADGDTMQRIAAYFAEALANRILKTWPGLYKAFNSTKIPVVSEEILVKKLFFEVFPFLKVAIVLTNQAIVEAMEGEKMIHIIDLNANETAQWLALLQVLSVRPEGPPHLRITGVHQQKQVLDRMARRLTEEAEKFDIPFRFDSVVCRLEDLDMEKLRVKTGEALAISSVLQLHTLLAADNEVLQKSSPLAGKSANGVHYSRYQHPNQTNLSELLEKDSVNGCSPSPDSVSSSALSQANVTKIDSFLNGLWSLTPKVMVVTEQDSNHNGATLMERSLEALHTYAAIFDCLESNMSRTSLERLKLEKMLFGEEIKNIIACEGGERKERHEKCEKWSQRFDLAGFRHVPLSYYGMLQARSLLQGYGCDGYRLKEENGCVMICWQDRPLFSVSAWRCCK 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4314453 4315868 - Carg25432-RA Car11g00741 156694

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00741 471 Pfam GRAS domain family 46 468 IPR005202 -
Car11g00741 471 ProSiteProfiles GRAS family profile. 37 468 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00741 - - - csv:101215435 832.402
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00741 Car-Chr11:4314453 Car04g02872 Car-Chr4:21709645 5.33E-80 dispersed
Car18g00804 Car-Chr18:9120096 Car11g00741 Car-Chr11:4314453 0 transposed
Car10g00825 Car-Chr10:4678782 Car11g00741 Car-Chr11:4314453 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car14g00115 CST 77 758 GRAS Transcription Factor Family AT2G37650 53.5 2.5e-194 676.0
Car06g00255 CST 76 757 GRAS Transcription Factor Family AT2G37650 52.8 3.7e-193 672.2
Car08g00679 . 5 535 GRAS Transcription Factor Family AT3G13840 50.8 6.9e-133 471.5
Car13g00086 . 212 670 GRAS Transcription Factor Family AT3G46600 52.1 5.3e-131 465.3
Car01g00558 . 230 683 GRAS Transcription Factor Family AT3G46600 50.4 3.4e-125 446.0
Car03g00840 . 25 443 GRAS Transcription Factor Family AT3G49950 60.4 2.4e-136 482.6
Car07g00583 . 39 437 GRAS Transcription Factor Family AT3G49950 59.8 7.5e-130 461.1
Car04g00719 . 93 562 GRAS Transcription Factor Family AT4G36710 52.9 1.5e-124 443.7
Car04g00576 . 49 438 GRAS Transcription Factor Family AT5G41920 69.1 3.0e-147 518.8
Car07g01146 CST 445 839 GRAS Transcription Factor Family AT5G41920 56.3 5.0e-118 421.8
Car03g00224 CST 456 832 GRAS Transcription Factor Family AT5G41920 56.4 1.5e-114 410.2
Car07g00433 CST 1 600 GRAS Transcription Factor Family AT5G66770 56.9 3.2e-174 609.0
Car04g00727 . 1 607 GRAS Transcription Factor Family AT5G66770 58.1 9.2e-174 607.4
Car03g00690 CST 1 621 GRAS Transcription Factor Family AT5G66770 55.5 1.3e-172 603.6
Car16g00690 . 1 592 GRAS Transcription Factor Family AT5G66770 57.8 1.5e-171 600.1
Car07g00624 CCT 57 535 GRAS Transcription Factor Family AT1G50600 58.8 1.2e-161 567.0
Car20g00575 . 50 538 GRAS Transcription Factor Family AT1G50600 58.9 1.2e-161 567.0
Car06g00589 CST 1 531 GRAS Transcription Factor Family AT1G50600 54.7 2.3e-160 562.8
Car16g00908 CST 45 543 GRAS Transcription Factor Family AT1G50600 57.7 7.5e-159 557.8
Car03g00543 . 197 635 GRAS Transcription Factor Family AT1G50600 57.0 6.0e-140 495.0
Car09g00833 CCT 206 576 GRAS Transcription Factor Family AT1G50600 62.5 1.5e-135 480.3
Car16g00572 CCT 211 581 GRAS Transcription Factor Family AT1G50600 62.0 1.9e-133 473.4
Car01g00889 . 195 576 GRAS Transcription Factor Family AT1G50600 50.8 3.2e-109 392.9
Car07g00301 . 111 475 GRAS Transcription Factor Family AT1G50600 54.4 3.0e-107 386.3
Car16g00958 . 1 626 GRAS Transcription Factor Family AT1G63100 50.4 5.9e-161 565.1
Car04g02063 . 101 639 GRAS Transcription Factor Family AT1G14920 67.0 1.1e-205 713.4
Car15g00905 . 44 575 GRAS Transcription Factor Family AT1G14920 66.6 5.6e-202 701.0
Car15g00691 . 50 595 GRAS Transcription Factor Family AT1G14920 61.9 9.9e-183 637.1
Car04g02213 . 50 608 GRAS Transcription Factor Family AT1G14920 57.9 5.3e-176 614.8
Car01g00341 . 32 538 GRAS Transcription Factor Family AT1G14920 55.1 8.2e-145 511.1
Car14g00752 . 28 533 GRAS Transcription Factor Family AT1G14920 52.8 2.4e-144 509.6
Car06g00637 . 27 392 GRAS Transcription Factor Family AT1G55580 53.5 2.5e-107 386.3
Car04g02213 . 29 609 GRAS Transcription Factor Family AT1G66350 58.0 1.4e-178 623.2
Car15g00691 . 50 592 GRAS Transcription Factor Family AT1G66350 61.1 5.1e-176 614.8
Car04g02063 . 58 637 GRAS Transcription Factor Family AT1G66350 56.3 3.4e-172 602.1
Car15g00905 . 44 571 GRAS Transcription Factor Family AT1G66350 59.0 6.6e-168 587.8
Car01g00341 . 1 536 GRAS Transcription Factor Family AT1G66350 55.7 6.2e-150 528.1
Car14g00752 . 1 533 GRAS Transcription Factor Family AT1G66350 53.4 1.8e-149 526.6
Car20g00340 CST 210 734 GRAS Transcription Factor Family AT1G07520 50.4 1.8e-139 493.4
Car07g00624 CCT 58 535 GRAS Transcription Factor Family AT5G48150 69.4 6.3e-192 667.5
Car20g00575 . 19 538 GRAS Transcription Factor Family AT5G48150 64.3 6.5e-189 657.5
Car06g00589 CST 17 531 GRAS Transcription Factor Family AT5G48150 59.8 1.5e-172 603.2
Car16g00908 CST 17 543 GRAS Transcription Factor Family AT5G48150 58.1 3.2e-172 602.1
Car03g00543 . 102 635 GRAS Transcription Factor Family AT5G48150 51.3 2.5e-148 522.7
Car16g00572 CCT 93 581 GRAS Transcription Factor Family AT5G48150 51.0 3.8e-136 482.3
Car09g00833 CCT 121 577 GRAS Transcription Factor Family AT5G48150 52.1 3.2e-135 479.2
Car07g00301 . 16 475 GRAS Transcription Factor Family AT5G48150 50.6 2.7e-118 422.9
Car04g02063 . 103 636 GRAS Transcription Factor Family AT2G01570 68.7 2.9e-212 735.3
Car15g00905 . 46 571 GRAS Transcription Factor Family AT2G01570 68.2 4.1e-206 714.9
Car15g00691 . 51 593 GRAS Transcription Factor Family AT2G01570 62.1 5.2e-185 644.8
Car04g02213 . 54 605 GRAS Transcription Factor Family AT2G01570 60.5 8.6e-180 627.5
Car01g00341 . 32 538 GRAS Transcription Factor Family AT2G01570 55.7 4.3e-147 518.8
Car14g00752 . 27 537 GRAS Transcription Factor Family AT2G01570 51.5 6.9e-145 511.5
Car04g02213 . 29 609 GRAS Transcription Factor Family AT1G66350 58.0 1.4e-178 623.2
Car15g00691 . 50 592 GRAS Transcription Factor Family AT1G66350 61.1 5.1e-176 614.8
Car04g02063 . 58 637 GRAS Transcription Factor Family AT1G66350 56.3 3.4e-172 602.1
Car15g00905 . 44 571 GRAS Transcription Factor Family AT1G66350 59.0 6.6e-168 587.8
Car01g00341 . 1 536 GRAS Transcription Factor Family AT1G66350 55.7 6.2e-150 528.1
Car14g00752 . 1 533 GRAS Transcription Factor Family AT1G66350 53.4 1.8e-149 526.6
Car15g00691 . 51 593 GRAS Transcription Factor Family AT3G03450 61.7 1.7e-177 619.8
Car04g02213 . 54 605 GRAS Transcription Factor Family AT3G03450 58.8 3.1e-171 599.0
Car15g00905 . 46 571 GRAS Transcription Factor Family AT3G03450 61.3 2.0e-170 596.3
Car04g02063 . 103 636 GRAS Transcription Factor Family AT3G03450 59.9 7.6e-170 594.3
Car14g00752 . 27 533 GRAS Transcription Factor Family AT3G03450 55.2 1.6e-151 533.5
Car01g00341 . 32 537 GRAS Transcription Factor Family AT3G03450 57.4 1.3e-148 523.9
Car04g02213 . 40 608 GRAS Transcription Factor Family AT5G17490 54.7 1.1e-157 553.9
Car15g00691 . 50 593 GRAS Transcription Factor Family AT5G17490 55.7 2.7e-156 549.3
Car04g02063 . 99 636 GRAS Transcription Factor Family AT5G17490 56.1 5.0e-155 545.0
Car15g00905 . 42 571 GRAS Transcription Factor Family AT5G17490 57.2 8.0e-153 537.7
Car01g00341 . 32 538 GRAS Transcription Factor Family AT5G17490 54.2 5.8e-135 478.4
Car14g00752 . 23 531 GRAS Transcription Factor Family AT5G17490 51.0 7.1e-133 471.5
Car01g00889 . 1 576 GRAS Transcription Factor Family AT1G21450 57.8 1.3e-175 613.6
Car09g00985 . 1 552 GRAS Transcription Factor Family AT1G21450 55.1 7.4e-163 571.2
Car06g00589 CST 155 531 GRAS Transcription Factor Family AT1G21450 53.4 1.4e-116 417.5
Car16g00572 CCT 213 581 GRAS Transcription Factor Family AT1G21450 50.5 2.9e-106 383.3
Car07g00301 . 171 475 GRAS Transcription Factor Family AT1G21450 50.8 7.3e-86 315.5
Car01g00558 . 309 683 GRAS Transcription Factor Family AT5G59450 55.7 8.8e-127 451.4
Car06g00255 CST 306 757 GRAS Transcription Factor Family AT5G59450 50.1 3.1e-124 443.0
Car03g00543 . 118 635 GRAS Transcription Factor Family AT4G17230 61.0 3.2e-173 605.5
Car07g00301 . 1 475 GRAS Transcription Factor Family AT4G17230 58.8 1.1e-149 527.3
Car16g00908 CST 49 543 GRAS Transcription Factor Family AT4G17230 52.0 1.0e-134 477.6
Car06g00589 CST 45 531 GRAS Transcription Factor Family AT4G17230 50.8 4.2e-133 472.2
Car16g00572 CCT 208 581 GRAS Transcription Factor Family AT4G17230 53.2 2.4e-112 403.3
Car07g00624 CCT 124 535 GRAS Transcription Factor Family AT2G04890 66.6 1.8e-160 562.8
Car20g00575 . 127 538 GRAS Transcription Factor Family AT2G04890 65.4 7.7e-159 557.4
Car06g00589 CST 139 531 GRAS Transcription Factor Family AT2G04890 61.5 1.7e-145 513.1
Car16g00908 CST 165 543 GRAS Transcription Factor Family AT2G04890 62.8 5.0e-142 501.5
Car09g00833 CCT 200 577 GRAS Transcription Factor Family AT2G04890 57.4 4.3e-125 445.3
Car16g00572 CCT 211 581 GRAS Transcription Factor Family AT2G04890 59.0 5.6e-125 444.9
Car03g00543 . 255 635 GRAS Transcription Factor Family AT2G04890 59.3 9.5e-125 444.1
Car07g00301 . 170 475 GRAS Transcription Factor Family AT2G04890 58.2 5.6e-93 338.6
Car11g00741 . 1 471 GRAS Transcription Factor Family AT1G50420 67.6 3.0e-178 622.1
Car10g00825 . 10 443 GRAS Transcription Factor Family AT1G50420 63.7 5.1e-162 568.2
Car18g00804 . 1 464 GRAS Transcription Factor Family AT1G50420 61.6 1.9e-156 549.7
Car06g00693 CCT,CST 410 773 GRAS Transcription Factor Family AT4G00150 55.4 6.2e-103 372.1
Car16g01079 . 275 637 GRAS Transcription Factor Family AT4G00150 54.1 1.8e-102 370.5
Car07g00433 CST 1 600 GRAS Transcription Factor Family AT3G50650 54.2 3.9e-150 528.9
Car16g00690 . 1 592 GRAS Transcription Factor Family AT3G50650 51.8 6.8e-147 518.1
Car07g01146 CST 185 837 GRAS Transcription Factor Family AT3G54220 60.1 1.5e-204 709.9
Car03g00224 CST 175 830 GRAS Transcription Factor Family AT3G54220 59.9 5.6e-204 708.0
Car04g00576 . 68 436 GRAS Transcription Factor Family AT3G54220 64.5 8.5e-136 481.5
Car07g00575 . 92 492 GRAS Transcription Factor Family AT4G37650 65.4 1.8e-155 546.6
Car03g00831 . 84 484 GRAS Transcription Factor Family AT4G37650 65.6 2.8e-153 539.3
Car02g00371 CCT 102 477 GRAS Transcription Factor Family AT4G37650 57.4 5.5e-125 445.3
Car08g00174 . 9 415 GRAS Transcription Factor Family AT4G37650 50.2 6.3e-113 405.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002014 2 5 1 2 2 2 3 2 2 1 2 2 3 2 2 2 2 4 3 2 2 2 2 2 2 2 2 3 2 0 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4288 PF03514 GRAS 8.10E-139 CL0063 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g00741 Car_Chr11 FPKM 1.972509 0.0 3.407754 2.595315 14.149679 16.781885 11.211439 3.959038 4.241425 3.91965