Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00844 ATGGAATACGATTCTGGAATTCCGATGTCTGTGACGGAGGGACACTCCTCTGCTCTCACGCCGTCCTTGCGCGAAGGTTCTTTTGCTAATTTCGATGCACTCTGGCAAATGAACTTGGGATCAGGTGAAATAATGGGATCTGGATCTTATCCCGTGCGACCTGGAGAGCCAGACTGTTCTTATTACATCAGAACTGGCCTCTGTAGATTTGGAGCTACATGTAGATTTAATCATCCACCTAATAGAGAGCTGGCTATTGCCACCGCAAGAATGAAGGGGGAGTTCCCGGAAAGAATTGGACAACCAGAATGTCAGTACTACTTGAAGACAGGAACTTGCAAGTTTGGGGCTACGTGCAAGTTTCATCATCCTAGAGACAAGGCTGGGATTGCTGGAAGAGTTGCCTTAAATATTTTAGGCTATCCACTTCGCCCGAGTGAAACTGAATGTGCTTATTATTTAAGAACTGGACAATGCAAGTTTGGAAATACATGTAAATTCCACCATCCTCAACCGACTAATATGATGGTCTCACTGCGTGGCTCCCCTATTTATCCAACCGTACAATCGCCAACTCCTGGTCAGCAGTCGTATCCAGGAGGAAGCACAAATTGGTCAAGGGCTTCCTTTATTCCTAGTCCACGATGGCAAGGCCCTTCCAGTTATGCATCTTTAATTTTACCTCAAGGAGTTCTCTCCGTTCCAGGCTGGAATACATTCAATGATCAGCTAGGATCAGTTTCATCGTCAGAAAGTCCACAACAAACGAGGGAGAATGTATTTCCTGAGAGGCCTGGCCAGCCTGAATGTCAATTTTACATGAAGACCGGAGACTGCAAGTTCGGTGCCGTTTGTCGATTTCATCATCCCAGAGAACGAGTAATTCCTGCTCCAGATTGTGTCTTGAGTCCAATTGGCCTGCCGTTACGTCCGGGAGAGCCTTTGTGCATCTTTTATTCGCGTTATGGGATCTGTAAGTTCGGTCCAAGCTGCAAGTTCGATCACCCTATGGGAATCTTCGCATACAATCTCTCTGCAGCGTCAACACCGAACGCCCCAGTTCAGCATTTGTTTGGGACGTCATCAGGAACTACTGCACTGAGTTTGTCATCTGAAGGGCTAGTCGAAGCAGGATCTGCAAAGGCGAGACGACTATCAATCACAGAGACACGAGAGATGTCATCTGATGATGAAAACATCGAGGCCGAGGGCTGA 1215 47.08 MEYDSGIPMSVTEGHSSALTPSLREGSFANFDALWQMNLGSGEIMGSGSYPVRPGEPDCSYYIRTGLCRFGATCRFNHPPNRELAIATARMKGEFPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPSETECAYYLRTGQCKFGNTCKFHHPQPTNMMVSLRGSPIYPTVQSPTPGQQSYPGGSTNWSRASFIPSPRWQGPSSYASLILPQGVLSVPGWNTFNDQLGSVSSSESPQQTRENVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERVIPAPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIFAYNLSAASTPNAPVQHLFGTSSGTTALSLSSEGLVEAGSAKARRLSITETREMSSDDENIEAEG 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5062614 5069126 + Carg22732-RA Car11g00844 156797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00844 404 ProSiteProfiles Zinc finger C3H1-type profile. 53 81 IPR000571 GO:0046872
Car11g00844 404 Gene3D - 143 190 - -
Car11g00844 404 Gene3D - 253 339 - -
Car11g00844 404 SMART c3hfinal6 98 125 IPR000571 GO:0046872
Car11g00844 404 SMART c3hfinal6 144 171 IPR000571 GO:0046872
Car11g00844 404 SMART c3hfinal6 264 291 IPR000571 GO:0046872
Car11g00844 404 SMART c3hfinal6 310 337 IPR000571 GO:0046872
Car11g00844 404 SMART c3hfinal6 53 80 IPR000571 GO:0046872
Car11g00844 404 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 28 258 - -
Car11g00844 404 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 256 403 - -
Car11g00844 404 SUPERFAMILY CCCH zinc finger 146 172 IPR036855 GO:0046872
Car11g00844 404 SUPERFAMILY CCCH zinc finger 313 337 IPR036855 GO:0046872
Car11g00844 404 ProSiteProfiles Zinc finger C3H1-type profile. 98 126 IPR000571 GO:0046872
Car11g00844 404 MobiDBLite consensus disorder prediction 243 264 - -
Car11g00844 404 ProSiteProfiles Zinc finger C3H1-type profile. 144 172 IPR000571 GO:0046872
Car11g00844 404 SUPERFAMILY CCCH zinc finger 58 81 IPR036855 GO:0046872
Car11g00844 404 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 312 337 IPR000571 GO:0046872
Car11g00844 404 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 147 171 IPR000571 GO:0046872
Car11g00844 404 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 55 80 IPR000571 GO:0046872
Car11g00844 404 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 101 125 IPR000571 GO:0046872
Car11g00844 404 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 266 291 IPR000571 GO:0046872
Car11g00844 404 PANTHER PROTEIN PHOSPHATASE RELATED 256 403 - -
Car11g00844 404 PANTHER PROTEIN PHOSPHATASE RELATED 28 258 - -
Car11g00844 404 MobiDBLite consensus disorder prediction 243 261 - -
Car11g00844 404 ProSiteProfiles Zinc finger C3H1-type profile. 264 292 IPR000571 GO:0046872
Car11g00844 404 SUPERFAMILY CCCH zinc finger 268 293 IPR036855 GO:0046872
Car11g00844 404 ProSiteProfiles Zinc finger C3H1-type profile. 310 338 IPR000571 GO:0046872
Car11g00844 404 Gene3D - 53 136 - -
Car11g00844 404 SUPERFAMILY CCCH zinc finger 102 127 IPR036855 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00049 Car-Chr2:348084 Car11g00844 Car-Chr11:5062614 2.83E-16 dispersed
Car06g01276 Car-Chr6:9156655 Car11g00844 Car-Chr11:5062614 5.75E-20 dispersed
Car11g00844 Car-Chr11:5062614 Car14g01459 Car-Chr14:12187897 2.80E-100 dispersed
Car10g00749 Car-Chr10:3949481 Car11g00844 Car-Chr11:5062614 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4294 PF00642 zf-CCCH 2.70E-10 CL0537 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00844 - - csv:101221929 816.224