Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00859 ATGAGTTCTTCTCAGGATCCTCAGCTTGTTCAACAACAATCCGTTGTGGATGTTGAAGAATTCGTCTCCGTTGAAAACCCCGATTCCAAACGCTCCCAGTTTGGATCGTTGTTCAAAAACCATTACCCTCCTGGCTTTTCCCGGAAGCTTGTGGCGGAGGTGATTGCGACGTATTTGCTAGTGTTTGTAACGTGTGGGGCGGCGGCATTGAACGGGAGCGATGCGCAAAGAGTGTCGCAGCTTGGTGCCTCGGTCGCGGGTGGCCTTATTGTGACGGTGATGATTTATGCCGTCGGACACATTTCCGGCGCCCATATGAACCCGGCTGTCACCACGGCTTTTGCTGCAACACGACACTTTCCATGGAAACAGGTTCCATTGTATGCAGCAGCTCAATTGAGTGGGGCAACCTGTGCAGCCTTTACACTGCGCCTATTATTACATCCCATCAAACACTTGGGCACTACCACGCCATCAGGATCAGATTTACAAGCACTCGTCATGGAGATTGTTGTTACCTTCTCAATGATGTTTGTCACTTGTGCTGTTGCAACCGATACCAAAGCCGTGGGAGAGCTGGCAGGTTTGGCAGTTGGTTCTGCCGTGTGTATCACATCCATCTTGGCTGGACCCGTATCAGGTGGGTCGATGAACCCTGTGAGGACATTAGGACCTGCAATGGCAAGTGATAATTATAAAGGACTTTGGGTGTACTTTGTTGGGCCGGTTACAGGAACCCTATTAGGGGCATGGTCATATAAGTTCATACGTGCCAGTGATAAACCTGTGCACTTAATTTCTCCTCACTCATTTTCACTCAAACTTCGAAGAATGTCAAGATCTGACGTTGGTGAAGGTGAAAGATGA 867 49.13 MSSSQDPQLVQQQSVVDVEEFVSVENPDSKRSQFGSLFKNHYPPGFSRKLVAEVIATYLLVFVTCGAAALNGSDAQRVSQLGASVAGGLIVTVMIYAVGHISGAHMNPAVTTAFAATRHFPWKQVPLYAAAQLSGATCAAFTLRLLLHPIKHLGTTTPSGSDLQALVMEIVVTFSMMFVTCAVATDTKAVGELAGLAVGSAVCITSILAGPVSGGSMNPVRTLGPAMASDNYKGLWVYFVGPVTGTLLGAWSYKFIRASDKPVHLISPHSFSLKLRRMSRSDVGEGER 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5293933 5297738 + Carg22891-RA Car11g00859 156812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00859 288 PANTHER MAJOR INTRINSIC PROTEIN, AQUAPORIN-LIKE PROTEIN-RELATED 17 272 - -
Car11g00859 288 SUPERFAMILY Aquaporin-like 42 266 IPR023271 -
Car11g00859 288 CDD MIP 48 256 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car11g00859 288 PRINTS Major intrinsic protein family signature 48 67 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car11g00859 288 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car11g00859 288 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car11g00859 288 PRINTS Major intrinsic protein family signature 168 186 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car11g00859 288 PRINTS Major intrinsic protein family signature 199 221 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car11g00859 288 PRINTS Major intrinsic protein family signature 236 256 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car11g00859 288 Gene3D Glycerol uptake facilitator protein. 8 263 IPR023271 -
Car11g00859 288 Pfam Major intrinsic protein 46 253 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car11g00859 288 PANTHER AQUAPORIN NIP2-1 17 272 IPR034294 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g01208 Car-Chr3:9461180 Car11g00859 Car-Chr11:5293933 1.33E-75 dispersed
Car11g00859 Car-Chr11:5293933 Car15g01216 Car-Chr15:9490964 2.13E-66 dispersed
Car11g00859 Car-Chr11:5293933 Car11g00860 Car-Chr11:5317019 9.07E-122 tandem
Car11g00859 Car-Chr11:5293933 Car14g00533 Car-Chr14:2914833 7.69E-66 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00859 K09874 - csv:101205692 503.827