Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car11g00862 | ATGGATTTGATTCCTGCAATTTCCACCGCCGCTGCCGCCATTACCACCGGCGGAGGAGGAGCTGTGAAATCCCCTGAATTTGACGCGGAAACACCCATCAAATTCCAACCAACCACCAAATCTCACCCCTTCACCAATGGTGTCCTCAAGCGCCACCACCACACGCCGCCCCCGCCTCCGTCGCTGGTCTACAAAGAATGCCTCAAGAATCACGCTGCCAGTATGGGCGGGCATGCTCTGGACGGCTGCGGCGAGTTCATGCCCTCCCCTACCGCTACTACCACAGATCCAACCTCTTTCAAATGCGCCGCCTGTGGCTGCCATCGGAATTTCCACCGCCGTGAGCCAGAAGATACAATCGCCACTCCGACGACAACCCATGTCATTGAGTATCAACCCCACCACCGTCATCATCCGCCGCCGCCGCCGCCGCCTGCCCACAGAAGCCCAAACTCTGCCTCTCCTCCACCGATCTCCTCCTCGTACTACCCTTCAGCACCCCAGATGCTTCTTGCCTTATCCGGCGGCATGACAGAGAACGCCGGTGGCGGATTCCACCACTCAATTCTGACGCCGAGTTCGAATTCGAGAAAACGATTCAGAACGAAATTTACTCAAAATCAAAAGGATAAAATGTATGAATTTGCAGAGAAAGTGGGATGGAAGATTCAGAAACGAGACGAAGATTTGATTCAAGACTTCTGTAGCCACGTCGGAGTCGACAGAGGCGTTCTCAAAGTCTGGATGCATAACAACAAGAACACTCTCTGTAAAAAAGACGGCGCCCAAAACATCAACGGCCACGGCGATGGAGACGACGACACAAAAATTAACGGCGGCGGCGCAAATGGGTCATCATCTTCCTCTTGA | 870 | 53.91 | MDLIPAISTAAAAITTGGGGAVKSPEFDAETPIKFQPTTKSHPFTNGVLKRHHHTPPPPPSLVYKECLKNHAASMGGHALDGCGEFMPSPTATTTDPTSFKCAACGCHRNFHRREPEDTIATPTTTHVIEYQPHHRHHPPPPPPPAHRSPNSASPPPISSSYYPSAPQMLLALSGGMTENAGGGFHHSILTPSSNSRKRFRTKFTQNQKDKMYEFAEKVGWKIQKRDEDLIQDFCSHVGVDRGVLKVWMHNNKNTLCKKDGAQNINGHGDGDDDTKINGGGANGSSSSS | 289 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 5329178 | 5330047 | + | Carg22894-RA | Car11g00862 | 156815 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car11g00862 | 289 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 64 | 115 | IPR006456 | - | |
| Car11g00862 | 289 | MobiDBLite | consensus disorder prediction | 260 | 289 | - | - | |
| Car11g00862 | 289 | Pfam | ZF-HD protein dimerisation region | 63 | 116 | IPR006456 | - | |
| Car11g00862 | 289 | MobiDBLite | consensus disorder prediction | 34 | 56 | - | - | |
| Car11g00862 | 289 | MobiDBLite | consensus disorder prediction | 132 | 161 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car11g00862 | Car-Chr11:5329178 | Car18g01061 | Car-Chr18:10824746 | 1.81E-60 | dispersed | |
| Car11g00862 | Car-Chr11:5329178 | Car14g00535 | Car-Chr14:2939620 | 1.32E-144 | wgd | |
| Car11g00862 | Car-Chr11:5329178 | Car15g00270 | Car-Chr15:1466885 | 6.33E-15 | wgd | |
| Car11g00862 | Car-Chr11:5329178 | Car04g02663 | Car-Chr4:20741567 | 2.62E-14 | wgd | |
| Car11g00862 | Car-Chr11:5329178 | Car04g01696 | Car-Chr4:9737682 | 2.33E-24 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 4297 | PF04770 | ZF-HD_dimer | 1.70E-28 | No_clan | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car11g00862 | - | - | csv:101204974 | 433.721 |