Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00862 ATGGATTTGATTCCTGCAATTTCCACCGCCGCTGCCGCCATTACCACCGGCGGAGGAGGAGCTGTGAAATCCCCTGAATTTGACGCGGAAACACCCATCAAATTCCAACCAACCACCAAATCTCACCCCTTCACCAATGGTGTCCTCAAGCGCCACCACCACACGCCGCCCCCGCCTCCGTCGCTGGTCTACAAAGAATGCCTCAAGAATCACGCTGCCAGTATGGGCGGGCATGCTCTGGACGGCTGCGGCGAGTTCATGCCCTCCCCTACCGCTACTACCACAGATCCAACCTCTTTCAAATGCGCCGCCTGTGGCTGCCATCGGAATTTCCACCGCCGTGAGCCAGAAGATACAATCGCCACTCCGACGACAACCCATGTCATTGAGTATCAACCCCACCACCGTCATCATCCGCCGCCGCCGCCGCCGCCTGCCCACAGAAGCCCAAACTCTGCCTCTCCTCCACCGATCTCCTCCTCGTACTACCCTTCAGCACCCCAGATGCTTCTTGCCTTATCCGGCGGCATGACAGAGAACGCCGGTGGCGGATTCCACCACTCAATTCTGACGCCGAGTTCGAATTCGAGAAAACGATTCAGAACGAAATTTACTCAAAATCAAAAGGATAAAATGTATGAATTTGCAGAGAAAGTGGGATGGAAGATTCAGAAACGAGACGAAGATTTGATTCAAGACTTCTGTAGCCACGTCGGAGTCGACAGAGGCGTTCTCAAAGTCTGGATGCATAACAACAAGAACACTCTCTGTAAAAAAGACGGCGCCCAAAACATCAACGGCCACGGCGATGGAGACGACGACACAAAAATTAACGGCGGCGGCGCAAATGGGTCATCATCTTCCTCTTGA 870 53.91 MDLIPAISTAAAAITTGGGGAVKSPEFDAETPIKFQPTTKSHPFTNGVLKRHHHTPPPPPSLVYKECLKNHAASMGGHALDGCGEFMPSPTATTTDPTSFKCAACGCHRNFHRREPEDTIATPTTTHVIEYQPHHRHHPPPPPPPAHRSPNSASPPPISSSYYPSAPQMLLALSGGMTENAGGGFHHSILTPSSNSRKRFRTKFTQNQKDKMYEFAEKVGWKIQKRDEDLIQDFCSHVGVDRGVLKVWMHNNKNTLCKKDGAQNINGHGDGDDDTKINGGGANGSSSSS 289
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 5329178 5330047 + Carg22894-RA Car11g00862 156815
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Car11g00862 289 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 64 115 IPR006456 -
Car11g00862 289 MobiDBLite consensus disorder prediction 260 289 - -
Car11g00862 289 Pfam ZF-HD protein dimerisation region 63 116 IPR006456 -
Car11g00862 289 MobiDBLite consensus disorder prediction 34 56 - -
Car11g00862 289 MobiDBLite consensus disorder prediction 132 161 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00862 Car-Chr11:5329178 Car18g01061 Car-Chr18:10824746 1.81E-60 dispersed
Car11g00862 Car-Chr11:5329178 Car14g00535 Car-Chr14:2939620 1.32E-144 wgd
Car11g00862 Car-Chr11:5329178 Car15g00270 Car-Chr15:1466885 6.33E-15 wgd
Car11g00862 Car-Chr11:5329178 Car04g02663 Car-Chr4:20741567 2.62E-14 wgd
Car11g00862 Car-Chr11:5329178 Car04g01696 Car-Chr4:9737682 2.33E-24 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4297 PF04770 ZF-HD_dimer 1.70E-28 No_clan Car TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00862 - - csv:101204974 433.721