Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00872 ATGGAGGCGCCAGCTTTGATTCTGAAGAACGAGGAGAATCTAAGAATATGTTGGACGGAAGGCCAAGTTCCGGCCACCAGGCGTGTCAAGAGACGGCGGAGAGATCCCTCCACTGCCTCTGCCATCGATCAAACTAATAATAAGCAGCAATCCGATCAAGCTCCGACCACCACTACGAAGCGGAGCTCAAGATTTCGCGGCGTCAGCAGACATAGATGGACGGGTCGGTTTGAAGCTCATTTATGGGATAAGCTTTCTTGGAACTTGACACAAAAGAAGAAGGGTAAACAAGGAGCTTATGATGAAGAAGAATCAGCTGCAAGAGCGTATGATTTAGCAGCACTCAAGTACTGGGGTGTAACAACAATCACTAATTTTCAGATATCAGATTATGAGAAGGAGATTGAGATGATGCAGACAATGACAAAGGAGGAGTATTTGGCCTCTTTAAGAAGGAAAAGCAGTGGATTCTCAAGAGGTGTGTCAAAATATAGAGGAGTGGCAAGGCACCATCACAATGGTAGATGGGAAGCAAGAATTGGGAGAGTTTATGGGAACAAGTACCTCTACCTTGGAACTTATGGCACTCAAGAGGAAGCTGCTCGAGCTTACGATATGGCTGCCATTGAATACCGAGGGATCAATGCAGTTACCAACTTCGACTGGAGCAATTACATGGCCTGGCTGAAACCTCCACTGCCACCCGTCGCGACCCCGAACGAATCCCATATGACATCGGACCCTCTCAAGGAGCTCTGCAACTCCAGCTCCATCATCCCAGCAGAAGAAACTTCCCTTTTCCAAAACCATCACTACCACGACAATTCCTTCCATTCTCTTCAAAAGCAAGAGCTTATTCATAAAAGCTGCAGCATTCCTCTCAACAGTTATGTTAAATCTTCTCCATCAGCTCTCAACCTCCTTCTTCGATCTTCATTTTTCAAGAAACTTGTCGAGACCAACTCCAACCTTTCGGTGGATGAGGCTGATAATGGAGAAGAGGCGAAGACTCGAGCTGTGCTTGACAATGTGTTTGATGAATTTGGAGATGTCTTCTGTGATAGACTTACAGATGAAACGTTTGTTTGCAGCTCCGACAAAGAGCTGCAAGAAAGTGAGCTTCATTCGTTCTTAAATGGCTCATTTCATCGCTTCAAAGCATCCTGA 1167 45.84 MEAPALILKNEENLRICWTEGQVPATRRVKRRRRDPSTASAIDQTNNKQQSDQAPTTTTKRSSRFRGVSRHRWTGRFEAHLWDKLSWNLTQKKKGKQGAYDEEESAARAYDLAALKYWGVTTITNFQISDYEKEIEMMQTMTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVYGNKYLYLGTYGTQEEAARAYDMAAIEYRGINAVTNFDWSNYMAWLKPPLPPVATPNESHMTSDPLKELCNSSSIIPAEETSLFQNHHYHDNSFHSLQKQELIHKSCSIPLNSYVKSSPSALNLLLRSSFFKKLVETNSNLSVDEADNGEEAKTRAVLDNVFDEFGDVFCDRLTDETFVCSSDKELQESELHSFLNGSFHRFKAS 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5425205 5427273 - Carg22904-RA Car11g00872 156825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00872 388 MobiDBLite consensus disorder prediction 26 65 - -
Car11g00872 388 MobiDBLite consensus disorder prediction 39 63 - -
Car11g00872 388 ProSiteProfiles AP2/ERF domain profile. 163 221 IPR001471 GO:0003700|GO:0006355
Car11g00872 388 ProSiteProfiles AP2/ERF domain profile. 64 127 IPR001471 GO:0003700|GO:0006355
Car11g00872 388 Pfam AP2 domain 63 119 IPR001471 GO:0003700|GO:0006355
Car11g00872 388 Pfam AP2 domain 162 213 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car11g00872 Car14g00544 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01517 Car-Chr4:8812436 Car11g00872 Car-Chr11:5425205 6.03E-95 dispersed
Car06g00748 Car-Chr6:5168799 Car11g00872 Car-Chr11:5425205 7.86E-55 dispersed
Car10g00411 Car-Chr10:2061374 Car11g00872 Car-Chr11:5425205 2.35E-08 dispersed
Car11g00872 Car-Chr11:5425205 Car20g00058 Car-Chr20:321250 8.15E-08 dispersed
Car05g00805 Car-Chr5:7560029 Car11g00872 Car-Chr11:5425205 4.94E-64 transposed
Car11g00872 Car-Chr11:5425205 Car14g00544 Car-Chr14:2995913 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4299 PF00847 AP2 6.00E-09 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00872 - - csv:101210782 643.269