Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car11g00872 | ATGGAGGCGCCAGCTTTGATTCTGAAGAACGAGGAGAATCTAAGAATATGTTGGACGGAAGGCCAAGTTCCGGCCACCAGGCGTGTCAAGAGACGGCGGAGAGATCCCTCCACTGCCTCTGCCATCGATCAAACTAATAATAAGCAGCAATCCGATCAAGCTCCGACCACCACTACGAAGCGGAGCTCAAGATTTCGCGGCGTCAGCAGACATAGATGGACGGGTCGGTTTGAAGCTCATTTATGGGATAAGCTTTCTTGGAACTTGACACAAAAGAAGAAGGGTAAACAAGGAGCTTATGATGAAGAAGAATCAGCTGCAAGAGCGTATGATTTAGCAGCACTCAAGTACTGGGGTGTAACAACAATCACTAATTTTCAGATATCAGATTATGAGAAGGAGATTGAGATGATGCAGACAATGACAAAGGAGGAGTATTTGGCCTCTTTAAGAAGGAAAAGCAGTGGATTCTCAAGAGGTGTGTCAAAATATAGAGGAGTGGCAAGGCACCATCACAATGGTAGATGGGAAGCAAGAATTGGGAGAGTTTATGGGAACAAGTACCTCTACCTTGGAACTTATGGCACTCAAGAGGAAGCTGCTCGAGCTTACGATATGGCTGCCATTGAATACCGAGGGATCAATGCAGTTACCAACTTCGACTGGAGCAATTACATGGCCTGGCTGAAACCTCCACTGCCACCCGTCGCGACCCCGAACGAATCCCATATGACATCGGACCCTCTCAAGGAGCTCTGCAACTCCAGCTCCATCATCCCAGCAGAAGAAACTTCCCTTTTCCAAAACCATCACTACCACGACAATTCCTTCCATTCTCTTCAAAAGCAAGAGCTTATTCATAAAAGCTGCAGCATTCCTCTCAACAGTTATGTTAAATCTTCTCCATCAGCTCTCAACCTCCTTCTTCGATCTTCATTTTTCAAGAAACTTGTCGAGACCAACTCCAACCTTTCGGTGGATGAGGCTGATAATGGAGAAGAGGCGAAGACTCGAGCTGTGCTTGACAATGTGTTTGATGAATTTGGAGATGTCTTCTGTGATAGACTTACAGATGAAACGTTTGTTTGCAGCTCCGACAAAGAGCTGCAAGAAAGTGAGCTTCATTCGTTCTTAAATGGCTCATTTCATCGCTTCAAAGCATCCTGA | 1167 | 45.84 | MEAPALILKNEENLRICWTEGQVPATRRVKRRRRDPSTASAIDQTNNKQQSDQAPTTTTKRSSRFRGVSRHRWTGRFEAHLWDKLSWNLTQKKKGKQGAYDEEESAARAYDLAALKYWGVTTITNFQISDYEKEIEMMQTMTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVYGNKYLYLGTYGTQEEAARAYDMAAIEYRGINAVTNFDWSNYMAWLKPPLPPVATPNESHMTSDPLKELCNSSSIIPAEETSLFQNHHYHDNSFHSLQKQELIHKSCSIPLNSYVKSSPSALNLLLRSSFFKKLVETNSNLSVDEADNGEEAKTRAVLDNVFDEFGDVFCDRLTDETFVCSSDKELQESELHSFLNGSFHRFKAS | 388 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 5425205 | 5427273 | - | Carg22904-RA | Car11g00872 | 156825 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car11g00872 | 388 | MobiDBLite | consensus disorder prediction | 26 | 65 | - | - | |
Car11g00872 | 388 | MobiDBLite | consensus disorder prediction | 39 | 63 | - | - | |
Car11g00872 | 388 | ProSiteProfiles | AP2/ERF domain profile. | 163 | 221 | IPR001471 | GO:0003700|GO:0006355 | |
Car11g00872 | 388 | ProSiteProfiles | AP2/ERF domain profile. | 64 | 127 | IPR001471 | GO:0003700|GO:0006355 | |
Car11g00872 | 388 | Pfam | AP2 domain | 63 | 119 | IPR001471 | GO:0003700|GO:0006355 | |
Car11g00872 | 388 | Pfam | AP2 domain | 162 | 213 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Car11g00872 | Car14g00544 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car04g01517 | Car-Chr4:8812436 | Car11g00872 | Car-Chr11:5425205 | 6.03E-95 | dispersed | |
Car06g00748 | Car-Chr6:5168799 | Car11g00872 | Car-Chr11:5425205 | 7.86E-55 | dispersed | |
Car10g00411 | Car-Chr10:2061374 | Car11g00872 | Car-Chr11:5425205 | 2.35E-08 | dispersed | |
Car11g00872 | Car-Chr11:5425205 | Car20g00058 | Car-Chr20:321250 | 8.15E-08 | dispersed | |
Car05g00805 | Car-Chr5:7560029 | Car11g00872 | Car-Chr11:5425205 | 4.94E-64 | transposed | |
Car11g00872 | Car-Chr11:5425205 | Car14g00544 | Car-Chr14:2995913 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
4299 | PF00847 | AP2 | 6.00E-09 | CL0081 | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car11g00872 | - | - | csv:101210782 | 643.269 |