Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00874 ATGGCTGGCTGTGGGTTTAAGGTTTTGATGGTTCTGCTGCTTTCAATGGCTGTTCTTATGCCAACTCTCCGAGCTGGCATTGCTGAATATGATGACTTTTTGCTCAAGAAGGCTGTTGCAGCCGAACAAGTGGCTCAGGAGGCCTACAACCCCGACCCCATGAATGTCACTAACCATCTCAACCTTCAAGTTCATTTAGCTTTTGAGGGAAGCAATAGCACAAGGAGGGGCTTAGCCAAATACAAGGGACCATGTTTGGCGACAAACCCGATCGACCGATGTTGGAGATGCAACAAAAAATGGGCCAAAAACCGTAAGAAGCTAGCCTCTTGCGTACTTGGTTTTGGCCGAAAAACTACCGGTGGGAAAAGAGGCCGTTACTACAAAGTAACCGACCCATCAGACACCGAATTCGTAAACCCTAAACCCGGAACACTAAGACACGCATGCATTCAAAAACGACCATTATGGATCACATTTGGACGTAGCATGATCATCAAGCTATCAAAAGAGCTATTAATATCAAGTCACAAGACCATCGATGCACGAGGTGCCAATGTCCATATAGCCTATGGTGCTGGTCTAAGCATTCAATTCTCCCGCAATGTAATCATCCACGGCCTACACATCCACCACATAGTGGCAGCCAATGGTGGCATGATCCGTGACGCATACAACCATGTGGGCCTACGAACCGTCAGCGATGGCGATGGCATATCGATCTTTGGGTCATCCAACATTTGGCTGGACCATCTCTCGATGTCAAACTGCCAAGATGGGCTCATAGACGCAATCCAAGGCTCCACAGCTATCACAGTGTCAAACTCCCATTTCACGCATCATAACGACGTGATGCTGTTTGGTGCAAGTGATTCATATCAAGGGGACTCCATCATGCAAGTCACCGTGGCATTTAACCATTTTGGTAAAGGGTTGGTGCAGCGAATGCCAAGGTGCCGATGGGGGTTCTTCCATGTGGTTAATAATGACTATACTCATTGGTTGATGTATGCAATTGGTGGGAGCCAACATCCAACGATTATAAGCCAAGGGAATAGGTTCATAGCGCCGCCAAACCCGGCCGCTAGGCAGATAACCAACAGGAACTATGCGCCGGAGAGTGTGTGGAAGACGTGGACGTGGAGGTCCGAAGGGGACTTGTTGATGAATGGAGCTTATTTTGTTCAGTCGGGGAGTCCGAGTAAGCGAAGGCCGTACAGCAGGTTGGACATGATCAAGGCTAAGCCTGGGACTTATGTTAGAAGGCTTACGCGCTTTGCGGGGTCGCTGAATTGCTATGAGGGGCGCCCATGCTAA 1317 48.9 MAGCGFKVLMVLLLSMAVLMPTLRAGIAEYDDFLLKKAVAAEQVAQEAYNPDPMNVTNHLNLQVHLAFEGSNSTRRGLAKYKGPCLATNPIDRCWRCNKKWAKNRKKLASCVLGFGRKTTGGKRGRYYKVTDPSDTEFVNPKPGTLRHACIQKRPLWITFGRSMIIKLSKELLISSHKTIDARGANVHIAYGAGLSIQFSRNVIIHGLHIHHIVAANGGMIRDAYNHVGLRTVSDGDGISIFGSSNIWLDHLSMSNCQDGLIDAIQGSTAITVSNSHFTHHNDVMLFGASDSYQGDSIMQVTVAFNHFGKGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNPAARQITNRNYAPESVWKTWTWRSEGDLLMNGAYFVQSGSPSKRRPYSRLDMIKAKPGTYVRRLTRFAGSLNCYEGRPC 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5436999 5438669 - Carg22906-RA Car11g00874 156827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00874 438 Pfam Pectate lyase 174 354 IPR002022 -
Car11g00874 438 Pfam Pectate lyase, N terminus 27 78 IPR007524 GO:0030570
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car11g00874 Car14g00546 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00827 Car-Chr5:8166679 Car11g00874 Car-Chr11:5436999 0 dispersed
Car11g00874 Car-Chr11:5436999 Car12g00671 Car-Chr12:4585982 0 dispersed
Car11g00874 Car-Chr11:5436999 Car14g00546 Car-Chr14:2999530 0 wgd
Car11g00874 Car-Chr11:5436999 Car04g01674 Car-Chr4:9637243 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00874 K01728 - csv:101202789 753.821