Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00916 ATGAAGCACCTCACAGTTTTGGCGGGAAGAAAGCTGTATGTTCCCGCCAAGTCCCTTGGCTCACTGGCCATTTCTTCATCCCTCCGAATTTCTCTGCTTCACTGTCCAGTAGCTATGGCGTCCGATTCTTCTCCGGTTAACTTCAATACAGGTCCTTCATCGCCTGATGATTCGTTCTCTAGTCCCATTGGAAACACCGTTTCGTCCTCAGGCGACGGTTATCGCCGTCGAAGCCGTCGCCGCTCATCTACTTCTTCGGAATTTGCTACACCGCCGCGTCAACGATCTCGACTGGCCTCGTCGGAAACCTCCCCGACGGCTACGGAGCCGCGCTCGCGCCGGAAAGGTGGTGGACGAAGAGCGTCTGGTAGCCGAGCGACTCCGGTGGCTGCTACACCTACTTCAACGGATGATATTCCGCCGTCGACGGAGCCTGGCGATGGTGACGACATGGACGAGGACCATCCGACCTTTGTGTGGGGGACGAATATTAGTGTTGACGATGTTAAGGGAGCGATTATTCGGTTTTTGAGGCATTTCCGCGATCGTCAGGCGTCGCAGTCTGAGGGGGATTTTCATACTGAGGGAAAATACGCGGATGCAATCAAGAGGGTTCTTGAAGTTGAAGGGGATTCGCTCGATGTGGATGCGCAGGATGTGTTCAATTACGATGCGGACTTATATACAAAGATGGTGACGTATCCTCTCGAGGTTCTCGCAATTTTTGATATTGTTCTGATGGAAATGGTGCCTCAAATCAACCCATTGTTCGAAAAGCACATTCAAACTCGGATTTTCAATCTCAGAACTTCTACTTCAATGAGAAATCTTAACCCATCTGACATTGAGAGGATGGTGTCACTGAAGGGAATGATTATACGGTGTAGTTCGATAATTCCTGAGATCAGAGAGGCGATATTTAGATGTCTTGTGTGTGGATACTACACTGACCCTGTAGCTATTGAGAGAGGGCGAATATCTGAGCCCATTATATGCTTGAAGGAAGAGTGCCAAGCAAGGAACTCAATGACGCTGGTACACAACCGATGCAGGTTTGCTGATAAGCAGATCGTTCGGCTTCAAGAGACTCCGGATGAGATACCTGAAGGAGGGACACCACATACTGTAAGCTTGTTAATGCATGACAAGCTGGTTGATACTGCAAAGCCTGGTGACAGGGTTGAGGTCACTGGGATTTACAGGGCCATGAGTGTGAGAGTTGGACCAACACAGAGATCTGTAAAATCATTATTCAAGACTTATATTGACTGTCTTCATATAAAGAAGGCTGACAAGTCAAGAATGGTGGCAGAGGACATGATAGAAGTTGAGAACCGGTTGGGAGGAAACATGAATGATATCTCATTTGATGAAGCAAAGGTGGAAGAGTTGAAGGAACTCTCCAAAAAACCTGATATATATGACAGACTAACCAGGTCATTGGCACCTAATATTTGGGAGCTTGATGATGTAAAGAAGGGCCTTCTTTGCCAGCTCTTTGGTGGGAGTGCCTTGAAGTTGGCATCCGGTGCAAGCTTTCGTGGAGATATTAACATACTTCTTGTTGGTGATCCTGGAACCAGCAAGTCTCAGCTTCTCCAATACATACATAAACTGTCTCCCCGTGGCATTTACACCAGTGGAAGGGGTAGCTCTGCTGTTGGTTTGACTGCTTATGTCACCAAAGATCCTGAAACAGGGGAAACAGTGTTGGAGAGCGGAGCCTTGGTTTTGAGTGACAGGGGCATATGCTGCATCGATGAATTTGACAAAATGTCTGAAAATGCAAGGAGCATGTTGCATGAGGTGATGGAGCAACAAACCGTTTCAATAGCGAAGGCTGGAATTATTGCTTCCCTCAATGCCAGAACTTCAGTATTAGCTTGTGCAAATCCTAGTGGTTCACGTTATAACCCTCGTCTGTCTGTGATTGATAACATACACCTTCCTCCTACTTTGTTATCTAGGTCAGTAAACACTGTTGATTCGTTAACCACATTATTTCTAGAACTTTGTATGCATGCACATCTAAATTCAGTACTGCTGAGCTGTTCTGTGATAAATTGTTCATATGTTTGGTACCATGAACTAAGGGTGTCGTGA 2103 46.7 MKHLTVLAGRKLYVPAKSLGSLAISSSLRISLLHCPVAMASDSSPVNFNTGPSSPDDSFSSPIGNTVSSSGDGYRRRSRRRSSTSSEFATPPRQRSRLASSETSPTATEPRSRRKGGGRRASGSRATPVAATPTSTDDIPPSTEPGDGDDMDEDHPTFVWGTNISVDDVKGAIIRFLRHFRDRQASQSEGDFHTEGKYADAIKRVLEVEGDSLDVDAQDVFNYDADLYTKMVTYPLEVLAIFDIVLMEMVPQINPLFEKHIQTRIFNLRTSTSMRNLNPSDIERMVSLKGMIIRCSSIIPEIREAIFRCLVCGYYTDPVAIERGRISEPIICLKEECQARNSMTLVHNRCRFADKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDTAKPGDRVEVTGIYRAMSVRVGPTQRSVKSLFKTYIDCLHIKKADKSRMVAEDMIEVENRLGGNMNDISFDEAKVEELKELSKKPDIYDRLTRSLAPNIWELDDVKKGLLCQLFGGSALKLASGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSENARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRSVNTVDSLTTLFLELCMHAHLNSVLLSCSVINCSYVWYHELRVS 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5807542 5811175 + Carg24673-RA Car11g00916 156869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00916 700 MobiDBLite consensus disorder prediction 127 141 - -
Car11g00916 700 Pfam MCM OB domain 274 403 IPR033762 -
Car11g00916 700 Pfam MCM N-terminal domain 172 270 IPR027925 -
Car11g00916 700 ProSitePatterns MCM family signature. 582 590 IPR018525 GO:0003677|GO:0005524|GO:0006260
Car11g00916 700 MobiDBLite consensus disorder prediction 46 157 - -
Car11g00916 700 CDD AAA 518 606 - -
Car11g00916 700 Pfam MCM P-loop domain 461 656 IPR001208 GO:0003677|GO:0005524|GO:0032508
Car11g00916 700 MobiDBLite consensus disorder prediction 46 72 - -
Car11g00916 700 MobiDBLite consensus disorder prediction 84 107 - -
Car11g00916 700 ProSiteProfiles MCM family domain profile. 473 656 IPR001208 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00916 Car-Chr11:5807542 Car17g00984 Car-Chr17:7900030 3.87E-90 dispersed
Car07g00105 Car-Chr7:637765 Car11g00916 Car-Chr11:5807542 8.54E-20 transposed
Car11g00916 Car-Chr11:5807542 Car19g00528 Car-Chr19:6875084 5.96E-52 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00916 K02212 - csv:101211850 1100.12