Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00916 ATGAAGCACCTCACAGTTTTGGCGGGAAGAAAGCTGTATGTTCCCGCCAAGTCCCTTGGCTCACTGGCCATTTCTTCATCCCTCCGAATTTCTCTGCTTCACTGTCCAGTAGCTATGGCGTCCGATTCTTCTCCGGTTAACTTCAATACAGGTCCTTCATCGCCTGATGATTCGTTCTCTAGTCCCATTGGAAACACCGTTTCGTCCTCAGGCGACGGTTATCGCCGTCGAAGCCGTCGCCGCTCATCTACTTCTTCGGAATTTGCTACACCGCCGCGTCAACGATCTCGACTGGCCTCGTCGGAAACCTCCCCGACGGCTACGGAGCCGCGCTCGCGCCGGAAAGGTGGTGGACGAAGAGCGTCTGGTAGCCGAGCGACTCCGGTGGCTGCTACACCTACTTCAACGGATGATATTCCGCCGTCGACGGAGCCTGGCGATGGTGACGACATGGACGAGGACCATCCGACCTTTGTGTGGGGGACGAATATTAGTGTTGACGATGTTAAGGGAGCGATTATTCGGTTTTTGAGGCATTTCCGCGATCGTCAGGCGTCGCAGTCTGAGGGGGATTTTCATACTGAGGGAAAATACGCGGATGCAATCAAGAGGGTTCTTGAAGTTGAAGGGGATTCGCTCGATGTGGATGCGCAGGATGTGTTCAATTACGATGCGGACTTATATACAAAGATGGTGACGTATCCTCTCGAGGTTCTCGCAATTTTTGATATTGTTCTGATGGAAATGGTGCCTCAAATCAACCCATTGTTCGAAAAGCACATTCAAACTCGGATTTTCAATCTCAGAACTTCTACTTCAATGAGAAATCTTAACCCATCTGACATTGAGAGGATGGTGTCACTGAAGGGAATGATTATACGGTGTAGTTCGATAATTCCTGAGATCAGAGAGGCGATATTTAGATGTCTTGTGTGTGGATACTACACTGACCCTGTAGCTATTGAGAGAGGGCGAATATCTGAGCCCATTATATGCTTGAAGGAAGAGTGCCAAGCAAGGAACTCAATGACGCTGGTACACAACCGATGCAGGTTTGCTGATAAGCAGATCGTTCGGCTTCAAGAGACTCCGGATGAGATACCTGAAGGAGGGACACCACATACTGTAAGCTTGTTAATGCATGACAAGCTGGTTGATACTGCAAAGCCTGGTGACAGGGTTGAGGTCACTGGGATTTACAGGGCCATGAGTGTGAGAGTTGGACCAACACAGAGATCTGTAAAATCATTATTCAAGACTTATATTGACTGTCTTCATATAAAGAAGGCTGACAAGTCAAGAATGGTGGCAGAGGACATGATAGAAGTTGAGAACCGGTTGGGAGGAAACATGAATGATATCTCATTTGATGAAGCAAAGGTGGAAGAGTTGAAGGAACTCTCCAAAAAACCTGATATATATGACAGACTAACCAGGTCATTGGCACCTAATATTTGGGAGCTTGATGATGTAAAGAAGGGCCTTCTTTGCCAGCTCTTTGGTGGGAGTGCCTTGAAGTTGGCATCCGGTGCAAGCTTTCGTGGAGATATTAACATACTTCTTGTTGGTGATCCTGGAACCAGCAAGTCTCAGCTTCTCCAATACATACATAAACTGTCTCCCCGTGGCATTTACACCAGTGGAAGGGGTAGCTCTGCTGTTGGTTTGACTGCTTATGTCACCAAAGATCCTGAAACAGGGGAAACAGTGTTGGAGAGCGGAGCCTTGGTTTTGAGTGACAGGGGCATATGCTGCATCGATGAATTTGACAAAATGTCTGAAAATGCAAGGAGCATGTTGCATGAGGTGATGGAGCAACAAACCGTTTCAATAGCGAAGGCTGGAATTATTGCTTCCCTCAATGCCAGAACTTCAGTATTAGCTTGTGCAAATCCTAGTGGTTCACGTTATAACCCTCGTCTGTCTGTGATTGATAACATACACCTTCCTCCTACTTTGTTATCTAGGTCAGTAAACACTGTTGATTCGTTAACCACATTATTTCTAGAACTTTGTATGCATGCACATCTAAATTCAGTACTGCTGAGCTGTTCTGTGATAAATTGTTCATATGTTTGGTACCATGAACTAAGGGTGTCGTGA 2103 46.7 MKHLTVLAGRKLYVPAKSLGSLAISSSLRISLLHCPVAMASDSSPVNFNTGPSSPDDSFSSPIGNTVSSSGDGYRRRSRRRSSTSSEFATPPRQRSRLASSETSPTATEPRSRRKGGGRRASGSRATPVAATPTSTDDIPPSTEPGDGDDMDEDHPTFVWGTNISVDDVKGAIIRFLRHFRDRQASQSEGDFHTEGKYADAIKRVLEVEGDSLDVDAQDVFNYDADLYTKMVTYPLEVLAIFDIVLMEMVPQINPLFEKHIQTRIFNLRTSTSMRNLNPSDIERMVSLKGMIIRCSSIIPEIREAIFRCLVCGYYTDPVAIERGRISEPIICLKEECQARNSMTLVHNRCRFADKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDTAKPGDRVEVTGIYRAMSVRVGPTQRSVKSLFKTYIDCLHIKKADKSRMVAEDMIEVENRLGGNMNDISFDEAKVEELKELSKKPDIYDRLTRSLAPNIWELDDVKKGLLCQLFGGSALKLASGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSENARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRSVNTVDSLTTLFLELCMHAHLNSVLLSCSVINCSYVWYHELRVS 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5807542 5811175 + Carg24673-RA Car11g00916 156869

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00916 700 MobiDBLite consensus disorder prediction 127 141 - -
Car11g00916 700 Pfam MCM OB domain 274 403 IPR033762 -
Car11g00916 700 Pfam MCM N-terminal domain 172 270 IPR027925 -
Car11g00916 700 ProSitePatterns MCM family signature. 582 590 IPR018525 GO:0003677|GO:0005524|GO:0006260
Car11g00916 700 MobiDBLite consensus disorder prediction 46 157 - -
Car11g00916 700 CDD AAA 518 606 - -
Car11g00916 700 Pfam MCM P-loop domain 461 656 IPR001208 GO:0003677|GO:0005524|GO:0032508
Car11g00916 700 MobiDBLite consensus disorder prediction 46 72 - -
Car11g00916 700 MobiDBLite consensus disorder prediction 84 107 - -
Car11g00916 700 ProSiteProfiles MCM family domain profile. 473 656 IPR001208 GO:0003677|GO:0005524|GO:0032508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00916 K02212 MCM4, CDC54; DNA replication licensing factor MCM4 [EC:5.6.2.3] - csv:101211850 1100.12
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00916 Car-Chr11:5807542 Car17g00984 Car-Chr17:7900030 3.87E-90 dispersed
Car07g00105 Car-Chr7:637765 Car11g00916 Car-Chr11:5807542 8.54E-20 transposed
Car11g00916 Car-Chr11:5807542 Car19g00528 Car-Chr19:6875084 5.96E-52 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car09g01162 . 106 749 Core DNA Replication Machinery Family AT4G14700 65.7 1.2e-243 840.1
Car09g01162 . 73 749 Core DNA Replication Machinery Family AT4G12620 66.2 2.3e-255 879.0
Car12g00497 . 2 361 Core DNA Replication Machinery Family AT2G37560 67.2 2.5e-142 502.3
Car04g01018 . 9 309 Core DNA Replication Machinery Family AT2G01120 65.3 8.1e-111 397.9
Car17g00403 . 3 535 Core DNA Replication Machinery Family AT4G29910 57.8 1.4e-174 610.1
Car05g00780 . 1 234 Core DNA Replication Machinery Family AT1G26840 71.4 4.4e-89 325.1
Car06g01442 . 1035 1836 Core DNA Replication Machinery Family AT1G79150 59.8 1.0e-242 837.0
Car06g01490 . 1 855 Core DNA Replication Machinery Family AT1G44900 76.8 0.0e+00 1244.6
Car14g00959 . 9 852 Core DNA Replication Machinery Family AT1G44900 76.9 0.0e+00 1235.3
Car07g00105 . 1 252 Core DNA Replication Machinery Family AT5G46280 76.7 2.6e-112 403.3
Car11g00916 . 39 656 Core DNA Replication Machinery Family AT2G16440 73.9 2.1e-243 839.3
Car19g00528 . 78 319 Core DNA Replication Machinery Family AT2G16440 64.2 2.0e-100 364.4
Car11g00917 . 27 256 Core DNA Replication Machinery Family AT2G16440 75.9 3.0e-93 340.5
Car12g01142 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.5 0.0e+00 1115.9
Car07g00005 . 7 838 Core DNA Replication Machinery Family AT5G44635 72.8 0.0e+00 1196.0
Car19g00528 . 79 271 Core DNA Replication Machinery Family AT5G44635 51.8 1.4e-45 182.2
Car17g00984 . 8 719 Core DNA Replication Machinery Family AT4G02060 85.7 0.0e+00 1220.3
Car08g00380 . 35 746 Core DNA Replication Machinery Family AT4G02060 85.5 0.0e+00 1214.9
Car19g00528 . 78 276 Core DNA Replication Machinery Family AT4G02060 50.7 1.9e-43 174.9
Car20g00308 . 30 525 Core DNA Replication Machinery Family AT2G29680 60.1 8.3e-163 570.9
Car20g00308 . 30 486 Core DNA Replication Machinery Family AT1G07270 58.2 5.2e-143 505.0
Car08g00201 . 219 811 Core DNA Replication Machinery Family AT3G25100 77.4 8.3e-263 903.3
Car17g01184 . 1 593 Core DNA Replication Machinery Family AT3G25100 76.5 3.1e-257 884.8
Car06g00301 . 26 792 Core DNA Replication Machinery Family AT3G09660 74.3 0.0e+00 1108.2
Car19g00342 . 16 645 Core DNA Replication Machinery Family AT2G14050 78.2 1.2e-288 989.2
Car20g00654 . 1 405 Core DNA Replication Machinery Family AT2G20980 54.5 1.7e-115 413.3
Car09g00680 . 7 968 Core DNA Replication Machinery Family AT1G77320 50.4 3.2e-259 892.1
Car08g00561 . 1 192 Core DNA Replication Machinery Family AT1G80190 66.5 4.6e-72 268.1
Car07g01151 . 1 145 Core DNA Replication Machinery Family AT3G12530 73.1 1.2e-61 233.0
Car04g02792 . 1 192 Core DNA Replication Machinery Family AT1G19080 61.5 3.3e-61 231.9
Car04g02792 . 1 192 Core DNA Replication Machinery Family AT3G55490 61.5 3.3e-61 231.9
Car14g01856 . 15 164 Core DNA Replication Machinery Family AT5G49010 66.7 5.0e-52 201.4
Car02g00355 . 1 768 Core DNA Replication Machinery Family AT5G67100 53.3 1.8e-200 697.6
Car18g00664 . 2 625 Core DNA Replication Machinery Family AT1G67630 62.8 1.3e-221 766.5
Car08g00153 . 1 447 Core DNA Replication Machinery Family AT1G67320 65.7 2.0e-185 646.0
Car09g01105 . 1 483 Core DNA Replication Machinery Family AT5G41880 60.0 3.0e-172 602.1
Car07g00805 . 47 1188 Core DNA Replication Machinery Family AT5G63960 78.4 0.0e+00 1790.8
Car14g00385 . 1 447 Core DNA Replication Machinery Family AT2G42120 74.9 1.7e-204 709.1
Car08g00153 . 1 447 Core DNA Replication Machinery Family AT1G67320 65.7 2.0e-185 646.0
Car02g01122 . 1 2094 Core DNA Replication Machinery Family AT1G08260 70.5 0.0e+00 2951.4
Car02g01122 . 9 2200 Core DNA Replication Machinery Family AT2G27120 67.3 0.0e+00 2917.9
Car01g00689 . 7 479 Core DNA Replication Machinery Family AT5G22110 69.6 1.7e-192 669.5
Car02g01084 . 1 439 Core DNA Replication Machinery Family AT5G22010 75.2 2.5e-181 633.3
Car02g01085 . 139 439 Core DNA Replication Machinery Family AT5G22010 65.9 2.9e-105 380.6
Car20g00116 . 317 497 Core DNA Replication Machinery Family AT5G22010 53.8 3.0e-46 184.5
Car16g00970 . 3 346 Core DNA Replication Machinery Family AT1G63160 86.3 2.5e-168 588.6
Car03g00180 . 1 320 Core DNA Replication Machinery Family AT5G27740 82.2 6.2e-157 550.8
Car04g01141 . 1 157 Core DNA Replication Machinery Family AT1G21690 87.3 8.1e-74 274.6
Car04g01140 . 36 220 Core DNA Replication Machinery Family AT1G21690 73.2 1.7e-71 266.9
Car15g00613 CST 1 363 Core DNA Replication Machinery Family AT1G77470 76.1 2.3e-154 542.3
Car04g02301 CST 1 362 Core DNA Replication Machinery Family AT1G77470 74.8 1.8e-151 532.7
Car05g01325 . 26 618 Core DNA Replication Machinery Family AT2G06510 69.0 3.1e-252 868.2
Car06g00537 CST 30 697 Core DNA Replication Machinery Family AT2G06510 52.1 1.1e-201 700.3
Car16g01142 CST 34 686 Core DNA Replication Machinery Family AT2G06510 52.2 4.6e-200 694.9
Car11g00189 . 1 623 Core DNA Replication Machinery Family AT5G08020 67.5 3.3e-243 838.2
Car06g00537 CST 6 804 Core DNA Replication Machinery Family AT5G45400 51.6 2.0e-230 796.2
Car16g01142 CST 10 785 Core DNA Replication Machinery Family AT5G45400 51.4 2.9e-224 775.8
Car11g00189 . 1 618 Core DNA Replication Machinery Family AT5G61000 65.3 5.3e-236 814.3
Car06g00537 CST 1 818 Core DNA Replication Machinery Family AT4G19130 53.3 6.5e-231 797.7
Car16g01142 CST 5 772 Core DNA Replication Machinery Family AT4G19130 54.8 1.1e-227 786.9
Car11g01012 . 1 359 Core DNA Replication Machinery Family AT5G26680 82.3 2.5e-173 605.5
Car14g01308 . 1 291 Core DNA Replication Machinery Family AT2G25100 63.6 9.3e-108 387.1
Car14g01310 . 1 198 Core DNA Replication Machinery Family AT2G25100 53.4 1.6e-62 236.9
Car20g00461 . 44 808 Core DNA Replication Machinery Family AT1G08130 67.8 9.5e-291 996.5
Car20g00461 . 204 808 Core DNA Replication Machinery Family AT1G49250 67.8 8.6e-237 817.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007588 1 2 1 1 1 1 3 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g00916 Car_Chr11 FPKM 3.969865 4.905485 9.159162 7.971233 12.810391 13.375047 13.038133 4.437126 4.402664 4.691845