Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00923 ATGAACAGAGCATTGCCGGAAATGTTGAACACGGCTGAGAATTGTGATGACACTCTCACTGTTCTTGAGAGGCAGAGGGCTCGTTTCAAATGGCAACAAGATCAGCTTTTGTATCAGCAGCAGCAGCCATTCAATGGGATGATGGATTACGGCGTTGGATTTCCACCGTCGGATCACCTCACCGGGTTTCCGGGCTTCATGAGTGCAGCCGGCGATGGCGGCGGTGGTGGGTTGTCACTTGTGGAGATGGTAATGGGAGCAGTGAAGCCTGACCCTGGTTTGGAAGATGGGTGGTCTGATCCTTCTCTGTTGTTGAATCCCCCCACTGCTTATGAACTCAATTCTTCTCTTTCTAGAACCTCCAGCTGCCCGCCGGCGGTGAATCCAGCGGCGGCGCCTGGAAGAGAAAGCTTCAAGAAAAGGAAAGCTGAGAAAGTTCAGAAACCCATTAACAACAAAGAGAAGAAGATCAAAGCAAGTTCAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATTATCAAAAACTACAGATCAAAACAGCACCAAGAACAACAATTCAACCACTACTACAACCACAACAAACAACAACAGAGAAACTTCAGCTGATACCTCCAAAGCCTCAGAGGTTAAAAAGCCTGATTACATTCATGTCAGAGCTCGCCGTGGCCAAGCCACTGATAGCCATAGCTTAGCAGAAAGAGCTAGAAGGGAAAAAATCAGTGAAAGAATGAAGTACCTGCAAGATTTAGTACCAGGATGCAACAAAATCACTGGAAAAGCTGGAATGCTCGACGAGATCATAAACTATGTTCAATCTCTTCAAAGACAAGTTGAGTTCTTGTCCATGAAGTTAGCTGCAGTTAATCCAAGGCTGGACTTCAATGTGGATGATCTCTTCCTCAAAGAGGTATTTCCCCCTCCTTGCACCACCGCAACCTTCGCGGCGATTGGTGGAATTTCATCAGAGATCACAGATCCTTCATCCTACTTACAATTTAATCCAAACAATCAACAAATCGTTCCGTGTTGTGGATTAGAACTGGGAATCAATACCTCCGATGTGGCTCTTCGAAGAACAATCAGCGCCCCTGTTTCTTTCCCGGAAAATTTCCTCGATTCATCCTGCCTCACCGTAAGTCCTTCCTTTGATTTCAATTTTCCGCCGTTGTCGATTCGTTTCCGATCGTTTGGAGTTTGTAATTCATCAAATGAATCAATCGATGCAGCAATTTCAAGGCTCCTCAGGGTGGGACGTGGATTTGCAGAACCTATACAATGTGGGTTTCGATCAAGGAAGATCATCAAACGCCTTTTCATCTCAACCTTACACAGGTTCGATCGAAGGAAGCAATGTAAAAATGGAACTATGAAGTAG 1377 45.24 MNRALPEMLNTAENCDDTLTVLERQRARFKWQQDQLLYQQQQPFNGMMDYGVGFPPSDHLTGFPGFMSAAGDGGGGGLSLVEMVMGAVKPDPGLEDGWSDPSLLLNPPTAYELNSSLSRTSSCPPAVNPAAAPGRESFKKRKAEKVQKPINNKEKKIKASSEEEEEEEEEEELSKTTDQNSTKNNNSTTTTTTTNNNRETSADTSKASEVKKPDYIHVRARRGQATDSHSLAERARREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNVDDLFLKEVFPPPCTTATFAAIGGISSEITDPSSYLQFNPNNQQIVPCCGLELGINTSDVALRRTISAPVSFPENFLDSSCLTVSPSFDFNFPPLSIRFRSFGVCNSSNESIDAAISRLLRVGRGFAEPIQCGFRSRKIIKRLFISTLHRFDRRKQCKNGTMK 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5855366 5857783 - Carg24680-RA Car11g00923 156876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00923 458 MobiDBLite consensus disorder prediction 204 233 - -
Car11g00923 458 Coils Coil 150 186 - -
Car11g00923 458 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 224 274 IPR011598 GO:0046983
Car11g00923 458 Pfam Helix-loop-helix DNA-binding domain 228 275 IPR011598 GO:0046983
Car11g00923 458 MobiDBLite consensus disorder prediction 178 203 - -
Car11g00923 458 MobiDBLite consensus disorder prediction 135 162 - -
Car11g00923 458 MobiDBLite consensus disorder prediction 114 233 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00923 Car-Chr11:5855366 Car19g00518 Car-Chr19:6820800 6.22E-100 dispersed
Car14g00403 Car-Chr14:2032496 Car11g00923 Car-Chr11:5855366 2.88E-44 dispersed
Car11g00923 Car-Chr11:5855366 Car19g00517 Car-Chr19:6820179 9.49E-51 wgd
Car11g00923 Car-Chr11:5855366 Car02g00257 Car-Chr2:1749504 5.76E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4303 PF00010 HLH 1.30E-06 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00923 - - cmo:103490373 498.049