Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01007 ATGGCAAGGAAGAAGGTGAAGTTGGCTTACATTCTGAACGACTCTGCAAGAAAGGCCACCTACAAGAAGAGGAAGAAAGGTCTTTTGAAGAAGTTGAGTGAATTAACCACTCTTTGTGGGATCCAAGCTTGCGCAATCGTCTTCAGCCCCTACGATTCTCCGCCCGAGCTCTGGCCCTCCGTCCTCGGCGTCCAACGCGTTCTCTCTCAGTTCAAGAACATGCCCGAAATGGAGCAGAGTAAGAAGATGGTGAATCAAGACACGTTTCTGCGCCAACGGATCGCGAAAGCGGAGGAGCAGCTGAAGAAGATAAGGAAAGAAAATCGGGAGAAGGAGGTGACACGGTTGATGTTCCAGATCCTGACTGGACCAGAATGGTTGCAAGGTCTCACCATGGTGGACTTGAATGACATTAGTTGGGTCATTGACGAGACGCTGAAGGGCATCAGCAAACGCATTGACTCCTTCAAAAGGCTGCTGCCGCCGCCGCCCCCCCAGACGGCGGCGTGGGCGATGGAGGTGGTGAGCCCTGAAGATGGGATGGAGTTTGTAGGGGATGATATGGGTTTGAGTTTTGAAGATCATAGTTATAATAGTGAGAATGTGATATGGTCCAATGCCTTCTTCTCTTAG 633 50.71 MARKKVKLAYILNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPSVLGVQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQILTGPEWLQGLTMVDLNDISWVIDETLKGISKRIDSFKRLLPPPPPQTAAWAMEVVSPEDGMEFVGDDMGLSFEDHSYNSENVIWSNAFFS 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7011197 7012301 - Carg16998-RA Car11g01007 156960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01007 210 Coils Coil 87 114 - -
Car11g01007 210 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Car11g01007 210 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 53 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g01041 Car-Chr10:10652330 Car11g01007 Car-Chr11:7011197 1.96E-104 dispersed
Car11g01007 Car-Chr11:7011197 Car18g00572 Car-Chr18:6171828 5.45E-64 dispersed
Car11g01007 Car-Chr11:7011197 Car13g00298 Car-Chr13:5438566 2.82E-66 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4306 PF00319 SRF-TF 4.80E-17 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01007 - - csv:101203059 287.345