Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car11g01037 | ATGGATGTGATTCTCTCTAAACTGGAAGAGCTGAGGAATTCCGATTCCATGGAGGAGCGACCGTGTAAACGCCGAAAAATCGAATCGGAGAATCGAATGGCGGATTTTCATGGCGCCGAATCCACGGATTTGAGAACACGGTGGAGAACAGAGTCGGAGCAGTATATTTACTCTTCAAAACTAGTTCAGGCTCTCCATCGAATCAGCCAGAAATCCGCATCACCGCTGGCGAGATCTTCAATTAGCGGCCGGAAAGTACGCGATACGGCGGATCGAGTTCTCGCCGTTGCCGCTAAAGGCAAGACGCGGTGGAGCAGAGCGATCTTGTCAAATCGACTGGATCTCAAACTCAAGAAGCAAAAGAAGGTGAAACCGGCCGGAAACTGCAGGTGGACGAAGAAATTGGAAGTATCGAAGACGAGGAAATTGCCGGCGGTACAGCGAAAAGTTCGAACTCTCAGCCGCCTGGTTCCCGGCTGCCGGAAAATCTCATTCCCGAACCTCCTTGAAGAAGCTACAGATTACATCGCCGCTCTACAGATGCAGGTCCGCGCCATGACAGCCGTTGCCGAGATTCTCGGCGGTGCTCCGGCCGATCGTCAAAGCTTCAGAACGAATTCGTAG | 624 | 52.24 | MDVILSKLEELRNSDSMEERPCKRRKIESENRMADFHGAESTDLRTRWRTESEQYIYSSKLVQALHRISQKSASPLARSSISGRKVRDTADRVLAVAAKGKTRWSRAILSNRLDLKLKKQKKVKPAGNCRWTKKLEVSKTRKLPAVQRKVRTLSRLVPGCRKISFPNLLEEATDYIAALQMQVRAMTAVAEILGGAPADRQSFRTNS | 207 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 7804188 | 7804811 | + | Carg27885-RA | Car11g01037 | 156990 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car11g01037 | 207 | PANTHER | TRANSCRIPTION FACTOR BHLH149 | 16 | 202 | - | - | |
| Car11g01037 | 207 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 148 | 194 | IPR036638 | GO:0046983 | |
| Car11g01037 | 207 | PANTHER | TRANSCRIPTION FACTOR IBH1-LIKE 1 | 16 | 202 | IPR044660 | GO:0006355 | |
| Car11g01037 | 207 | CDD | bHLH_AtIBH1_like | 135 | 188 | IPR044549 | GO:0006355 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car05g00940 | Car-Chr5:9063250 | Car11g01037 | Car-Chr11:7804188 | 6.04E-61 | dispersed | |
| Car11g01037 | Car-Chr11:7804188 | Car12g00973 | Car-Chr12:9812667 | 8.48E-55 | dispersed | |
| Car10g01016 | Car-Chr10:10105771 | Car11g01037 | Car-Chr11:7804188 | 5.62E-100 | wgd | |
| Car10g01016 | Car-Chr10:10105771 | Car11g01037 | Car-Chr11:7804188 | 5.62E-100 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car11g01037 | - | - | cmo:103492109 | 260.766 |