Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01051 ATGACACCCGTTTGGAGCTATGTTCTGTCCAAGTGGCAAACGTTGTCCACTTCTGATCACGCCTCTGTGGTTTCCATTAACTTATTTGTAGCTCTTCTCTGTGCTTGTATTGTGATTGGTCATCTTCTTGAGGAGACCCGGTGGATGAATGAGTCGATCACTGCCCTCTTCATTGGTATGTTTACCGGAGTCATCATTTTACTGGTCAGTGGTGGGAAAAGTTCGCATTTATTGCTCTTCAGCGAAGACATATTCTTCATTTATCTTCTGCCACCTATCATATTCAATGCTGGGTTTCAGGTGAAAAAGAAGCAGTTCTTTGTTAACTTCATTACAATTATGCTGTTTGGAGCAATTGGTACATTAGTCTCTTGTTCAATCATCTCATTAGGAGCTTTTCAGATCTTTCAGAGAATGGATGTTGGAACACTGGATATTGCCGATATTTTAGCAATTGGAGCTATATTTGCAGCTACAGATTCTGTATGCACATTGCAGATATTAAACCAGGATGAAACACCTCTACTTTACAGTCTAGTATTTGGGGAGGGTGTAGTGAATGATGCTACATCTGTGGTGCTTTTCAATGCAATTCAGAGCTTAGACCTCAGTAAAGTTGATGCAAGAGTTGCTTTGCATTTTATCGGGAGCTTCTTTTATTTGTTTTCAACGAGCACTCTACTCGGAGTGTTTGTTGGGCTGCTGAGTGCTTATACAATCAGAAAGTTATATTTTGGCAGGCACTCGACAGATCGTGAGGTTGCTCTAATGATGCTCATGGCATACCTTTCATATATGCTGGCTGAATTATTAGATTTGAGTGGCATTCTCACAGTGTTCTTTTGTGGAATTGTAATGTCACACTATACATGGCATAATGTGACTGAGAGTTCAAGAGTTACCACTAAGCATGCTTTTGCTACCTTATCCTTCATTTCAGAGACGTTTATCTTCGTGTATGTTGGCATGGATGCCTTGGACATTGAGAAGTGGAGCTATGTCAGTGATAGTCCAGGGACATCTGTTGCTGTGAGTGCAATATTACTAGCTCTGGTTATGGTTGGAAGAGCTGCTTTTGTTTTTCCATTATCATTTTTATCCAACTTAGTTAAAAAATCGGCTTCCGAGAAAATTACCTTCAGGCAACAAGTTATAATCTGGTGGGCTGGTCTCATGAGAGGGGCTGTCTCTATTGCTCTTGCTTATCATCAGTTCACTAGAGCTGGCCACACTCAACTGCGGGGGAATGCAATTATGATAACTAGCACCGTAACTGTTGTCCTTTTTAGCACGATGGTGTTTGGGATATTGACCAAGCCTCTTATAAATTGTTTGGTACCTCACCCCAAAGACACCACCAGCTCCAGCATGCTATCGGAACCAGCGGCTCCAAAATCATTCTCGGTACCGCTACTCGGAAGTGCACAGGATTCGGAGGTGGATCTTGATAGTCCCAATATTCCTCGTCCAAGCAGTATCCGTGCACTCCTTGCGACTCCTACGCATACTGTTCATCGCTACTGGCGAAAATTTGATGATGCCTTCATGCGTCCAATGTTCGGGGGGCGGGGTTTTGTCCCCTTTGTTCCAGGATCGCCAACAGAAAGGGGTAGGCACTGA 1620 43.09 MTPVWSYVLSKWQTLSTSDHASVVSINLFVALLCACIVIGHLLEETRWMNESITALFIGMFTGVIILLVSGGKSSHLLLFSEDIFFIYLLPPIIFNAGFQVKKKQFFVNFITIMLFGAIGTLVSCSIISLGAFQIFQRMDVGTLDIADILAIGAIFAATDSVCTLQILNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSLDLSKVDARVALHFIGSFFYLFSTSTLLGVFVGLLSAYTIRKLYFGRHSTDREVALMMLMAYLSYMLAELLDLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFISETFIFVYVGMDALDIEKWSYVSDSPGTSVAVSAILLALVMVGRAAFVFPLSFLSNLVKKSASEKITFRQQVIIWWAGLMRGAVSIALAYHQFTRAGHTQLRGNAIMITSTVTVVLFSTMVFGILTKPLINCLVPHPKDTTSSSMLSEPAAPKSFSVPLLGSAQDSEVDLDSPNIPRPSSIRALLATPTHTVHRYWRKFDDAFMRPMFGGRGFVPFVPGSPTERGRH 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8054318 8059566 + Carg26501-RA Car11g01051 157004

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01051 539 Pfam Sodium/hydrogen exchanger family 29 443 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01051 - - - csv:101214934 946.036
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00973 Car-Chr1:9275838 Car11g01051 Car-Chr11:8054318 0 dispersed
Car10g00948 Car-Chr10:8052594 Car11g01051 Car-Chr11:8054318 0 dispersed
Car11g01051 Car-Chr11:8054318 Car17g01068 Car-Chr17:8308602 0 dispersed
Car11g01051 Car-Chr11:8054318 Car18g00580 Car-Chr18:6521603 1.18E-27 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car03g01154 . 1 409 Antiporters AT5G46110 79.2 1.5e-173 606.3
Car07g00186 . 1 381 Antiporters AT5G46110 73.5 2.2e-153 539.3
Car18g01023 . 52 393 Antiporters AT5G46110 68.5 2.0e-130 463.0
Car16g00554 . 41 395 Antiporters AT5G54800 79.2 2.1e-158 555.8
Car07g00254 . 5 390 Antiporters AT5G54800 72.8 1.7e-152 536.2
Car03g00473 . 46 388 Antiporters AT5G54800 78.2 5.2e-149 524.6
Car16g00851 CCT,ECH 1 380 Antiporters AT5G54800 70.5 1.6e-145 513.1
Car09g00851 CCT,ECH 1 242 Antiporters AT5G54800 66.3 1.7e-78 290.4
Car09g00852 . 1 118 Antiporters AT5G54800 68.7 4.0e-48 189.5
Car13g00725 CST 50 414 Antiporters AT3G01550 59.2 2.6e-113 406.0
Car18g00163 CST 53 383 Antiporters AT3G01550 53.1 3.8e-96 349.0
Car13g00725 CST 1 416 Antiporters AT5G33320 72.2 3.2e-157 552.0
Car18g00163 CST 1 385 Antiporters AT5G33320 65.6 8.0e-132 467.6
Car03g00473 . 46 389 Antiporters AT1G61800 80.9 5.3e-160 561.2
Car07g00254 . 34 387 Antiporters AT1G61800 79.7 5.3e-160 561.2
Car16g00554 . 24 396 Antiporters AT1G61800 75.1 1.5e-159 559.7
Car16g00851 CCT,ECH 45 381 Antiporters AT1G61800 75.9 9.7e-146 513.8
Car09g00851 CCT,ECH 44 242 Antiporters AT1G61800 74.4 2.3e-78 290.0
Car09g00852 . 1 116 Antiporters AT1G61800 65.5 3.9e-46 183.0
Car06g00995 . 48 417 Antiporters AT5G17630 75.4 2.5e-149 525.8
Car16g00554 . 85 394 Antiporters AT5G17630 54.6 5.9e-90 328.6
Car07g00254 . 90 388 Antiporters AT5G17630 54.3 2.2e-89 326.6
Car16g00851 CCT,ECH 89 379 Antiporters AT5G17630 51.8 8.5e-81 298.1
Car09g00851 CCT,ECH 66 241 Antiporters AT5G17630 51.1 1.2e-39 161.4
Car02g00199 . 28 419 Antiporters AT3G13320 74.2 9.5e-155 543.9
Car01g00019 . 58 424 Antiporters AT3G13320 75.8 2.6e-152 535.8
Car06g00609 . 9 445 Antiporters AT3G13320 67.5 1.4e-150 530.0
Car20g00598 . 76 410 Antiporters AT3G13320 67.9 9.5e-131 464.2
Car14g01084 . 103 433 Antiporters AT3G13320 68.1 1.1e-129 460.7
Car07g01042 CST 68 435 Antiporters AT3G13320 50.1 8.4e-95 344.7
Car07g01042 CST 5 434 Antiporters AT2G38170 68.5 1.9e-156 549.7
Car06g00205 CST 9 427 Antiporters AT2G38170 62.6 3.1e-143 505.8
Car03g00308 CST 5 356 Antiporters AT2G38170 59.8 1.5e-126 450.3
Car01g00604 . 4 332 Antiporters AT2G38170 54.3 7.4e-89 325.1
Car07g01042 CST 1 402 Antiporters AT3G51860 69.7 2.1e-144 509.6
Car06g00205 CST 21 394 Antiporters AT3G51860 67.0 1.2e-134 477.2
Car03g00308 CST 1 325 Antiporters AT3G51860 60.1 3.9e-114 409.1
Car01g00604 . 3 308 Antiporters AT3G51860 56.3 1.4e-84 310.8
Car02g00199 . 36 390 Antiporters AT3G51860 50.4 3.0e-82 303.1
Car20g00598 . 68 380 Antiporters AT3G51860 51.7 4.8e-72 269.2
Car14g01084 . 109 400 Antiporters AT3G51860 50.3 1.9e-65 247.3
Car07g01042 CST 37 445 Antiporters AT5G01490 60.3 4.4e-131 465.3
Car06g00205 CST 28 426 Antiporters AT5G01490 58.1 3.3e-126 449.1
Car03g00308 CST 34 358 Antiporters AT5G01490 55.2 2.3e-111 399.8
Car01g00604 . 3 335 Antiporters AT5G01490 50.6 4.2e-81 299.3
Car02g00199 . 44 419 Antiporters AT1G55720 72.4 4.5e-144 508.4
Car01g00019 . 58 427 Antiporters AT1G55720 70.5 3.5e-141 498.8
Car06g00609 . 8 441 Antiporters AT1G55720 65.3 5.1e-140 495.0
Car20g00598 . 76 410 Antiporters AT1G55720 65.6 4.6e-125 445.3
Car14g01084 . 103 429 Antiporters AT1G55720 63.5 8.5e-119 424.5
Car02g00199 . 45 419 Antiporters AT1G55730 76.8 2.7e-157 552.4
Car01g00019 . 58 428 Antiporters AT1G55730 75.3 4.7e-154 541.6
Car06g00609 . 8 441 Antiporters AT1G55730 68.4 2.0e-152 536.2
Car20g00598 . 49 410 Antiporters AT1G55730 65.5 6.4e-135 478.0
Car14g01084 . 103 433 Antiporters AT1G55730 67.3 8.1e-130 461.1
Car07g01042 CST 68 434 Antiporters AT1G55730 51.2 2.0e-96 350.1
Car10g00948 . 4 534 Antiporters AT5G27150 76.9 1.5e-234 809.3
Car11g01051 . 9 536 Antiporters AT5G27150 76.6 5.8e-231 797.3
Car08g01079 . 22 536 Antiporters AT5G27150 74.1 3.4e-215 745.0
Car17g01068 CCT,ECH 25 534 Antiporters AT5G27150 70.2 7.4e-202 700.7
Car01g00973 . 12 525 Antiporters AT5G27150 54.8 5.0e-150 528.5
Car08g01079 . 22 545 Antiporters AT3G06370 71.3 5.4e-208 721.1
Car10g00948 . 5 533 Antiporters AT3G06370 69.8 2.1e-204 709.1
Car11g01051 . 6 535 Antiporters AT3G06370 68.9 8.9e-203 703.7
Car17g01068 CCT,ECH 25 536 Antiporters AT3G06370 65.9 4.0e-187 651.7
Car01g00973 . 12 525 Antiporters AT3G06370 55.1 8.5e-145 511.1
Car01g00973 . 1 532 Antiporters AT5G55470 65.3 7.5e-199 690.6
Car11g01051 . 18 522 Antiporters AT5G55470 59.4 1.6e-169 593.2
Car10g00948 . 18 520 Antiporters AT5G55470 59.0 1.2e-167 587.0
Car08g01079 . 19 523 Antiporters AT5G55470 58.5 7.6e-167 584.3
Car17g01068 CCT,ECH 11 520 Antiporters AT5G55470 56.1 7.8e-156 547.7
Car10g00948 . 10 537 Antiporters AT3G05030 78.4 7.6e-239 823.5
Car11g01051 . 10 539 Antiporters AT3G05030 77.7 2.1e-236 815.5
Car08g01079 . 22 536 Antiporters AT3G05030 75.0 1.1e-221 766.5
Car17g01068 CCT,ECH 25 537 Antiporters AT3G05030 70.1 6.5e-206 714.1
Car01g00973 . 12 525 Antiporters AT3G05030 54.8 7.8e-151 531.2
Car14g01175 . 102 681 Antiporters AT1G15460 68.0 4.0e-222 768.1
Car05g00340 CCT,ECH 99 656 Antiporters AT1G15460 66.8 4.6e-218 754.6
Car12g00301 CCT,ECH 99 659 Antiporters AT1G15460 64.0 1.8e-209 726.1
Car01g00241 CST 102 645 Antiporters AT1G15460 58.8 7.2e-179 624.4
Car13g00726 . 102 644 Antiporters AT1G15460 57.2 3.3e-176 615.5
Car14g00866 CST 102 679 Antiporters AT1G15460 55.6 7.4e-176 614.4
Car01g00241 CST 3 697 Antiporters AT3G06450 70.7 1.3e-294 1009.2
Car14g00866 CST 3 743 Antiporters AT3G06450 66.4 1.2e-284 976.1
Car13g00726 . 3 651 Antiporters AT3G06450 72.7 5.4e-280 960.7
Car05g00340 CCT,ECH 3 635 Antiporters AT3G06450 56.4 3.0e-214 742.3
Car12g00301 CCT,ECH 3 637 Antiporters AT3G06450 54.8 6.3e-212 734.6
Car14g01175 . 6 665 Antiporters AT3G06450 53.7 3.3e-205 712.2
Car01g00241 CST 1 702 Antiporters AT2G47160 79.0 0.0e+00 1143.3
Car14g00866 CST 1 750 Antiporters AT2G47160 75.6 0.0e+00 1135.6
Car13g00726 . 1 680 Antiporters AT2G47160 73.5 6.9e-304 1040.0
Car05g00340 CCT,ECH 4 635 Antiporters AT2G47160 57.2 6.7e-214 741.1
Car12g00301 CCT,ECH 4 637 Antiporters AT2G47160 55.4 6.9e-211 731.1
Car14g01175 . 1 665 Antiporters AT2G47160 54.4 2.2e-209 726.1
Car14g01175 . 1 681 Antiporters AT1G74810 67.8 1.5e-268 922.5
Car05g00340 CCT,ECH 4 656 Antiporters AT1G74810 66.7 3.9e-256 881.3
Car12g00301 CCT,ECH 4 654 Antiporters AT1G74810 63.3 3.4e-244 841.6
Car13g00726 . 7 644 Antiporters AT1G74810 58.4 1.2e-217 753.4
Car01g00241 CST 7 645 Antiporters AT1G74810 59.2 3.0e-216 748.8
Car14g00866 CST 7 679 Antiporters AT1G74810 55.9 2.6e-212 735.7
Car01g00241 CST 1 689 Antiporters AT3G62270 81.6 0.0e+00 1140.2
Car14g00866 CST 1 742 Antiporters AT3G62270 77.5 0.0e+00 1139.0
Car13g00726 . 1 695 Antiporters AT3G62270 75.2 6.5e-307 1050.0
Car05g00340 CCT,ECH 4 635 Antiporters AT3G62270 59.6 7.8e-220 760.8
Car12g00301 CCT,ECH 4 637 Antiporters AT3G62270 57.7 2.4e-216 749.2
Car14g01175 . 1 665 Antiporters AT3G62270 55.9 4.2e-213 738.4
Car05g00340 CCT,ECH 4 654 Antiporters AT4G32510 68.0 7.7e-265 910.2
Car12g00301 CCT,ECH 4 656 Antiporters AT4G32510 67.1 3.7e-259 891.3
Car14g01175 . 1 682 Antiporters AT4G32510 62.4 1.3e-248 856.3
Car01g00241 CST 1 659 Antiporters AT4G32510 54.7 6.0e-209 724.5
Car13g00726 . 1 650 Antiporters AT4G32510 54.5 4.3e-207 718.4
Car14g00866 CST 1 680 Antiporters AT4G32510 52.0 6.0e-201 698.0
Car05g00340 CCT,ECH 4 652 Antiporters AT5G25430 69.1 1.5e-260 896.0
Car12g00301 CCT,ECH 4 654 Antiporters AT5G25430 67.9 1.1e-258 889.8
Car14g01175 . 7 682 Antiporters AT5G25430 62.9 3.6e-238 821.6
Car01g00241 CST 7 645 Antiporters AT5G25430 55.8 4.3e-207 718.4
Car13g00726 . 7 656 Antiporters AT5G25430 54.7 2.2e-203 706.1
Car14g00866 CST 7 679 Antiporters AT5G25430 52.7 5.6e-199 691.4
Car04g02089 . 1 542 Antiporters AT2G01980 70.9 2.5e-215 746.5
Car04g02089 . 1 428 Antiporters AT1G14660 60.5 1.7e-140 497.3
Car05g00083 . 23 586 Antiporters AT5G11800 79.3 4.9e-239 824.3
Car10g00640 CCT,CST 65 619 Antiporters AT5G11800 76.8 6.2e-226 780.8
Car11g00567 CCT,CST 19 587 Antiporters AT5G11800 76.0 1.8e-225 779.2
Car18g01106 CCT,ECH 57 563 Antiporters AT5G11800 70.5 1.4e-188 656.8
Car12g00585 CCT 66 388 Antiporters AT5G11800 78.7 5.6e-126 448.7
Car18g01106 CCT,ECH 31 571 Antiporters AT5G51710 80.8 1.2e-239 826.2
Car05g00083 . 51 560 Antiporters AT5G51710 69.8 4.9e-188 654.8
Car10g00640 CCT,CST 83 592 Antiporters AT5G51710 69.2 1.9e-184 642.9
Car11g00567 CCT,CST 51 560 Antiporters AT5G51710 70.0 2.5e-184 642.5
Car12g00585 CCT 96 387 Antiporters AT5G51710 68.9 1.4e-102 370.9
Car10g00640 CCT,CST 68 616 Antiporters AT2G19600 82.1 1.6e-234 809.3
Car05g00083 . 44 586 Antiporters AT2G19600 80.6 5.2e-233 804.3
Car11g00567 CCT,CST 6 584 Antiporters AT2G19600 78.2 8.9e-233 803.5
Car18g01106 CCT,ECH 32 560 Antiporters AT2G19600 67.7 1.4e-182 636.7
Car12g00585 CCT 89 387 Antiporters AT2G19600 80.1 8.9e-124 441.4
Car16g00311 . 143 558 Antiporters AT1G49810 76.1 2.2e-177 619.0
Car16g00311 . 1 575 Antiporters AT3G19490 77.1 2.9e-244 841.6
Car20g00065 CST 80 568 Antiporters AT5G12860 90.0 3.3e-253 871.3
Car02g01038 CST 80 567 Antiporters AT5G12860 89.6 3.4e-250 861.3
Car16g00212 . 89 577 Antiporters AT5G12860 50.1 3.2e-131 466.1
Car16g00212 . 86 578 Antiporters AT5G64280 68.6 5.6e-197 684.5
Car04g00378 . 4 524 Antiporters AT5G64280 61.5 1.9e-181 632.9
Car16g00212 . 1 578 Antiporters AT5G64290 68.4 9.7e-213 736.9
Car04g00378 . 22 524 Antiporters AT5G64290 71.4 6.8e-198 687.6
Car10g00936 . 3 537 Antiporters AT1G08960 65.9 8.9e-187 650.6
Car14g00488 . 16 571 Antiporters AT5G17850 50.6 6.8e-150 528.1
Car06g00754 . 51 565 Antiporters AT5G17850 52.1 4.1e-147 518.8
Car14g00825 . 1 529 Antiporters AT2G47600 70.2 8.7e-211 730.3
Car08g00582 CCT,CST 1 291 Antiporters AT1G79900 70.5 5.1e-120 427.9
Car14g01160 CCT,CST 1 300 Antiporters AT1G79900 67.8 2.0e-116 416.0
Car01g00097 CCT,CST 1 300 Antiporters AT1G79900 65.4 7.1e-114 407.5
Car17g00746 CCT,CST 13 314 Antiporters AT1G79900 65.0 9.0e-109 390.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000259 5 3 4 6 6 5 5 5 4 4 4 4 5 5 5 5 5 9 6 4 4 5 4 6 5 6 6 10 5 5 155
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g01051 Car_Chr11 FPKM 1.140819 1.667695 1.447665 1.256313 1.94658 2.237168 2.027346 1.475446 1.397318 1.535385